| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3847022 = | NA (NA) | 11 (0.040) | 6/88 | NT | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | CP009273 | 3847050 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
Only 100 of 419 total aligned reads displayed.
TCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCC > CP009273/3846984‑3847117 | tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta > 1:13676149/1‑68 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta > 1:13352278/1‑68 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta < 1:29461860/68‑1 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta < 1:26728247/68‑1 (MQ=255)tCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTta < 1:9201883/68‑1 (MQ=255) cTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTtat < 1:903452/68‑1 (MQ=255) tGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTtata < 1:21286711/68‑1 (MQ=255) tGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTtata < 1:22170143/68‑1 (MQ=255) tGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTtata < 1:873708/68‑1 (MQ=255) tGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTtata < 1:9315882/68‑1 (MQ=255) tGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTtata < 1:27988944/68‑1 (MQ=255) gAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTatat > 1:16522073/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTtat > 1:12173578/1‑64 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:20388755/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:14927416/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:18536852/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:29745690/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:26470508/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:26283656/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:15729846/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:10025668/1‑68 (MQ=255) aaTACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAttt > 1:2520758/1‑68 (MQ=255) aCCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGc < 1:9763657/68‑1 (MQ=255) tccgacaccaacccgcacgctaaatataaaaggggagcggtttcccgctcccctttTATATTTAGCGt < 1:14388526‑M2/12‑1 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt > 1:7780442/1‑68 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt < 1:13120705/68‑1 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt > 1:29383929/1‑68 (MQ=255) cTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGt < 1:12756436/68‑1 (MQ=255) gAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGc < 1:17639623/68‑1 (MQ=255) aGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCgg < 1:17067615/68‑1 (MQ=255) gTAATTCAGATTCAAGTCGCACCAAAGGGGCGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCggg > 1:22697156/1‑68 (MQ=255) gTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCggg > 1:4337122/1‑68 (MQ=255) ccaacccgcacgctaaatataAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGtt < 1:25570845‑M1/47‑1 (MQ=255) aaTTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCggg < 1:8356041/66‑1 (MQ=255) aaTTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCggg < 1:11211956/66‑1 (MQ=255) aaTTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCggg < 1:6524451/66‑1 (MQ=255) ttCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTgg < 1:4849810/68‑1 (MQ=255) ttCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTgg > 1:2837689/1‑68 (MQ=255) ttCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTgg < 1:28972826/68‑1 (MQ=255) ttCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTgg < 1:14287577/68‑1 (MQ=255) aacccccacgcaaaatataaaaggggagcggtttcccgctcccctttTATATTTAGCGTGCGGGTTgg < 1:21160491‑M2/21‑1 (MQ=255) tCAGTTTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgt < 1:13838203/68‑1 (MQ=255) tCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgt > 1:21829110/1‑68 (MQ=255) tCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgt > 1:5318339/1‑68 (MQ=255) tCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgt > 1:23585413/1‑68 (MQ=255) cAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgtg < 1:3992752/68‑1 (MQ=255) ttCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGgtgt < 1:10246234/65‑1 (MQ=255) ttCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCgg > 1:11681645/1‑68 (MQ=255) ttCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCgg > 1:26863312/1‑68 (MQ=255) tCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGga > 1:14580227/1‑68 (MQ=255) gTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcg > 1:20035792/1‑68 (MQ=255) gTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcg > 1:5754585/1‑68 (MQ=255) gTCGCACCAAAGGGGAGAGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcg > 1:20937692/1‑68 (MQ=255) aCCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGgatgcgatgc < 1:17470412/67‑1 (MQ=255) cAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTg > 1:19480741/1‑67 (MQ=255) cAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGa < 1:24095097/68‑1 (MQ=255) cAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGa < 1:10871139/68‑1 (MQ=255) cGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGGGTGCGGGTTGGTGTCTGATGCGATCCTGACGCa > 1:28164295‑M1/2‑68 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:7335875‑M1/68‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:22371171‑M1/68‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:7504587‑M1/68‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:4161693‑M1/68‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:3312873‑M1/68‑1 (MQ=255) GGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:952247‑M1/68‑1 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:26082452‑M1/66‑1 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa > 1:6028440‑M1/1‑66 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa > 1:23042175‑M1/1‑66 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa < 1:27786782‑M1/66‑1 (MQ=255) GGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCa > 1:24529734‑M1/1‑66 (MQ=255) AGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCtt < 1:16854109‑M1/68‑1 (MQ=255) AGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCtt < 1:3088528‑M1/68‑1 (MQ=255) AGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCtt < 1:25456451‑M1/68‑1 (MQ=255) GCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCtt > 1:21634394‑M1/1‑67 (MQ=255) GGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATcc < 1:24790975‑M1/68‑1 (MQ=255) aaCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGc < 1:24392486/67‑1 (MQ=255) aaCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGc < 1:11905787/67‑1 (MQ=255) aaCCGCTCCCCTTTTATATTTAGCGGGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGcc < 1:19712065/68‑1 (MQ=255) aCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCTTCTTATCCGccc < 1:18339192/68‑1 (MQ=255) aCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGccc < 1:8091422/68‑1 (MQ=255) aCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGccc < 1:22520631/68‑1 (MQ=255) aCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGc > 1:10520446/1‑66 (MQ=255) aCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGc > 1:25772428/1‑66 (MQ=255) aCCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGc > 1:28657674/1‑66 (MQ=255) ccgctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCt > 1:15533599‑M2/13‑68 (MQ=255) ccgctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCt < 1:24220437‑M2/56‑1 (MQ=255) ccgctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCt < 1:12934251‑M2/56‑1 (MQ=255) ccgctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCt < 1:28565622‑M2/56‑1 (MQ=255) ccgctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCt < 1:5563141‑M2/56‑1 (MQ=255) gctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTAc < 1:27236019‑M2/58‑1 (MQ=255) gctcccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCAGCTTATCcgcccga > 1:20861553‑M2/11‑65 (MQ=255) ccctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtc < 1:15118147‑M2/62‑1 (MQ=255) cctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtc > 1:6854320‑M2/6‑67 (MQ=255) cctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtc > 1:12407749‑M2/6‑67 (MQ=255) ctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctc < 1:18118271‑M2/64‑1 (MQ=255) ctttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctc < 1:23849307‑M2/64‑1 (MQ=255) tttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctct < 1:6350364‑M2/65‑1 (MQ=255) tttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctct < 1:4961850‑M2/65‑1 (MQ=255) ttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctct > 1:23521971‑M2/3‑67 (MQ=255) ttTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCAtctct > 1:8485776‑M2/3‑67 (MQ=255) tataTTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTccc > 1:3493156/1‑68 (MQ=255) | TCTGAAATACCTGAAGTAATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATATTTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGACGCATCTTATCCGCCCTACCATCTCTCCC > CP009273/3846984‑3847117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |