| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3921522 | 362 (1.010) | 18 (0.060) | 5/100 | NT | 5.2% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 333 (1.040) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
Only 100 of 465 total aligned reads displayed.
GGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCC > CP009273/3921467‑3921601 | ggCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCa > 1:23882958/1‑68 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:23187177‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:3253659‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:10381005‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:5098060‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:11372665‑M2/68‑2 (MQ=255) ccAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:7930217‑M2/67‑2 (MQ=255) ccAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:13395379‑M2/67‑2 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAgg > 1:13890581‑M2/1‑65 (MQ=255) gctgctGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcg < 1:29474825‑M2/67‑5 (MQ=255) gctgctGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcg < 1:2564832‑M2/67‑5 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggc > 1:15795741‑M2/1‑61 (MQ=255) tgctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggc > 1:24171911‑M2/1‑61 (MQ=255) gctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt > 1:7057184/1‑67 (MQ=255) gctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt > 1:20892454/1‑67 (MQ=255) gctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt > 1:21046311/1‑67 (MQ=255) tgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTc > 1:27809470/1‑67 (MQ=255) tgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTc < 1:29785828/67‑1 (MQ=255) ttCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCa > 1:8655817/1‑68 (MQ=255) ttCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCa > 1:9420773/1‑68 (MQ=255) cgcgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATc < 1:26451709/68‑1 (MQ=255) cgAGAGCGTCGCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATccc > 1:21924272/1‑68 (MQ=255) cgAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATccc > 1:17345963/1‑68 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:9696350/1‑68 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:15516123/1‑68 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:18977638/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:3466248/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:6636346/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:14333326/1‑68 (MQ=255) agCGTCCATTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCggaa > 1:19322038/1‑66 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattaca > 1:288669‑M2/1‑47 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:5843764/66‑1 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGt < 1:10287452/66‑1 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:11170588/1‑67 (MQ=255) gTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagc > 1:4447602‑M2/1‑45 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagcaga > 1:7675868‑M2/1‑43 (MQ=255) cccTCCACTGCTGTAATAATTCATCGCCGCCAGCGGCTGAGCAggcggcgataaattattacagcaga > 1:26901475‑M2/1‑43 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:25011418/68‑1 (MQ=255) tctcTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCTGTATCAAAgcg > 1:18531384/1‑67 (MQ=255) tctcTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg > 1:17877961/1‑67 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc > 1:14741470/1‑68 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGcc < 1:22467238/68‑1 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCGAAGCGCCa > 1:20373828/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:25409780/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:8464676/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:10134557/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:11968705/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:17539833/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:14961540/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:20735005/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:11791688/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGGATCAAAGCGCCa > 1:28377147/1‑68 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:8794562/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:8172594/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:22754048/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:7230864/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:19945420/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:4005679/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:6369478/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:19562271/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg > 1:21637335/1‑68 (MQ=255) tgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGa < 1:13134661/68‑1 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:12511363/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat < 1:5505589/68‑1 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:10000343/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:9838808/1‑68 (MQ=255) tgTAATATTTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat < 1:15878365/68‑1 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:4754789/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:16084539/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:22206890/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:24474060/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:27327383/1‑68 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa > 1:20256034/1‑67 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa > 1:16944337/1‑67 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa > 1:23453544/1‑67 (MQ=255) ataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATc < 1:11046734/68‑1 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:28994457/1‑68 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:27108370/1‑68 (MQ=255) aatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGa > 1:21156010/1‑68 (MQ=255) atTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaa < 1:26725493/68‑1 (MQ=255) atTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaa < 1:15215323/68‑1 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATACCGGTATCAAAGCGCCAGATATGATCGaaa > 1:28051613/1‑68 (MQ=255) aTCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAAt > 1:9174881/1‑67 (MQ=255) tCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgc > 1:21508093/1‑68 (MQ=255) cgccgcCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgc > 1:6877077/1‑67 (MQ=255) cgccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCa < 1:10719741/67‑1 (MQ=255) ccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatga > 1:28484142/1‑68 (MQ=255) cAGCGTCTGCGCAGGCGGCTGCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatga < 1:19842448/67‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:16812792/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:12201045/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:3614732/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:16286870/68‑1 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTAGCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:23669102/68‑1 (MQ=255) cGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGcc > 1:12660766/1‑68 (MQ=255) gTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgatg < 1:25196398/65‑1 (MQ=255) gTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCg > 1:18375827/1‑68 (MQ=255) tCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCgg > 1:7548622/1‑68 (MQ=255) tCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCgg > 1:2599849/1‑68 (MQ=255) gCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGttt > 1:8089598/1‑67 (MQ=255) gCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGttt > 1:14035595/1‑67 (MQ=255) | GGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGATGCCGGGTTTGCC > CP009273/3921467‑3921601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |