| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4127796 | NA (NA) | 8 (0.030) | 6/98 | NT | NA | noncoding (80/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4127807 | NA (NA) | noncoding (91/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 524 total aligned reads displayed.
ATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTT > CP009273/4127740‑4127873 | tCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:12738340‑M2/68‑2 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:5423957‑M2/67‑2 (MQ=255) ccGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa < 1:481291‑M2/67‑2 (MQ=255) cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatc < 1:24437340‑M2/68‑4 (MQ=255) cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatc < 1:13121964‑M2/68‑4 (MQ=255) cGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatc < 1:22343285‑M2/68‑4 (MQ=255) cTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatcaggc < 1:13361055‑M2/68‑8 (MQ=255) cTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCatcaggc > 1:29149944‑M2/1‑61 (MQ=255) cAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt < 1:17119475/68‑1 (MQ=39) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:7515788/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:15078161/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:14250996/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:29420301/1‑68 (MQ=40) aaaGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 1:7256468/1‑68 (MQ=40) aGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt > 1:3913147/1‑67 (MQ=40) cAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCa > 1:4404081/1‑68 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAAc > 1:23090524/1‑67 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:15331460/68‑1 (MQ=255) ttCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt < 1:2453198/68‑1 (MQ=255) tCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt > 1:124963/1‑67 (MQ=255) tCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt > 1:5610427/1‑67 (MQ=255) tCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACt > 1:23505039/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:21046633/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:18326980/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:1899597/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:26113940/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:13533072/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:28748255/1‑67 (MQ=255) atatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCgg > 1:1036623/1‑67 (MQ=255) ataaTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGTCAAATTTGCGTTCAAACTCCCgg > 1:27426730/1‑67 (MQ=18) tatTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGAc > 1:23756064/1‑68 (MQ=255) atTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACa > 1:23635155/1‑68 (MQ=255) tccAGAGATTGCGTAGGCCGGATCAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:10481068/66‑1 (MQ=21) tGCATAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:21346346/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:27139597/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:22849025/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:22714016/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:10235018/68‑1 (MQ=255) tGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg < 1:17321082/68‑1 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGGAATTTTGCGTTCAAACTCCCGGACCAGc > 1:26470850/1‑68 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:14665090/1‑67 (MQ=255) gCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAg > 1:403632/1‑67 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:9732075/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:29828994/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:10576682/1‑68 (MQ=255) agagATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCg > 1:10095521/1‑68 (MQ=255) gagaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCgg > 1:12156849/1‑68 (MQ=255) agcttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTAAAACTCCCGGACAAGACggg > 1:28996643/4‑68 (MQ=18) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:7811199/1‑68 (MQ=255) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:12243914/1‑68 (MQ=255) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:18034485/1‑68 (MQ=255) agaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg > 1:16479627/1‑68 (MQ=255) gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg < 1:18817356/67‑1 (MQ=255) gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg < 1:20574875/67‑1 (MQ=255) gaTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCggg < 1:3357889/67‑1 (MQ=255) aTTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAg > 1:20107693/1‑68 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAg < 1:9503448/67‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAg < 1:13708156/67‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:8140874/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:22479520/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:6998694/68‑1 (MQ=255) ttGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGt < 1:20823124/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg > 1:11622637/1‑68 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg < 1:2787185/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTgg < 1:25644543/68‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTg < 1:1280942/67‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:16137931/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:5236835/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:1693470/1‑68 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa > 1:21759641/1‑68 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa < 1:18191040/67‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa < 1:3410001/67‑1 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGa < 1:19752131/67‑1 (MQ=255) gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTa > 1:3056614/1‑68 (MQ=255) tcTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:11890410/2‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:16681780/1‑68 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg > 1:11273760/1‑68 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAgg < 1:15580076/68‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAgg < 1:8555529/68‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg < 1:28476887/67‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg < 1:22112773/67‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg < 1:24074357/67‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAg < 1:17459595/67‑1 (MQ=255) tGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGt < 1:10837763/68‑1 (MQ=255) aTAAGCGTAGCGCatcaggcctacgcaatctctgcaatatattgaatttgcgtgcttttgtaggccgg > 1:9283530‑M2/1‑13 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACACGCCGGGAGTTTGGAGTAGGTTAt > 1:15854033/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:12039928/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:5901220/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:655495/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:28038629/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:21582322/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:24814661/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:25106770/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt < 1:8269260/68‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTAt > 1:18522447/1‑68 (MQ=255) aGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTc < 1:19226802/68‑1 (MQ=255) gTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTccc > 1:8749653/1‑67 (MQ=255) gcATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCActct < 1:17727519/67‑1 (MQ=255) gcATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCtt > 1:11151682/1‑68 (MQ=255) gcATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCtt > 1:25516570/1‑68 (MQ=255) | ATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTCAAACTCCCGGACAAGCCGGGAGTTTGGAGTAGGTTATTCCCACTCTT > CP009273/4127740‑4127873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |