| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 66,706 | T→C | 87.1% | intergenic (‑174/‑168) | araD ← / → araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 66,706 | 0 | T | C | 87.1% | 8101.2 / inf | 2908 | intergenic (‑174/‑168) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| Reads supporting (aligned to +/- strand): ref base T (216/160); new base C (1417/1108); total (1637/1271) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.48e-01 | |||||||||||
Only 100 of 2913 total aligned reads displayed.
ATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGG > CP009273/66639‑66773 | cAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAc > 1:6143136/1‑67 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTAcgc > 1:742766/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc > 1:309081/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc > 1:14062730/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc > 1:13828513/1‑68 (MQ=255) aaaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgc > 1:4249374/1‑68 (MQ=255) aaGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTAcgcg < 1:14595756/68‑1 (MQ=255) tgtgACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGttt > 1:2125001/1‑68 (MQ=255) tgtgACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGttt > 1:28854751/1‑68 (MQ=255) gtgACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGtttt > 1:7088731/1‑68 (MQ=255) gtgACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGtt < 1:18536501/66‑1 (MQ=255) gtgACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGtt < 1:16711632/66‑1 (MQ=255) gACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGttttt < 1:6751845/67‑1 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCa > 1:24258337/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:19910478/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:16471862/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:2967631/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:27622137/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:8370843/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:14944867/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:11041615/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:13336923/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:8925583/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:15195252/1‑68 (MQ=255) gCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCa > 1:9189347/1‑68 (MQ=255) cGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATg > 1:20694187/1‑68 (MQ=255) gCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGcc < 1:5066236/68‑2 (MQ=255) gCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGcc < 1:5871754/68‑2 (MQ=255) gCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGc < 1:11640767/67‑1 (MQ=255) gCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGc < 1:18849/67‑1 (MQ=255) aataatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTg > 1:22958413/1‑68 (MQ=255) aataatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTg < 1:19546578/68‑1 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTgg > 1:24752852/1‑67 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTgg > 1:1128103/1‑67 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTgg > 1:25558433/1‑67 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGt < 1:25822933/68‑1 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGt < 1:10779466/68‑1 (MQ=255) taatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTAGTCATGGCCTTgg > 1:23141759/1‑67 (MQ=255) aatCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGt > 1:11854931/1‑67 (MQ=255) atCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTcc < 1:27887762/68‑1 (MQ=255) tCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTccc > 1:17491224/1‑68 (MQ=255) tCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTccc > 1:10020546/1‑68 (MQ=255) tCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTc > 1:640042/1‑66 (MQ=255) aaTGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTccc > 1:943242/1‑66 (MQ=255) aaTGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGc < 1:2814986/68‑1 (MQ=255) aTGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCt < 1:18039309/68‑1 (MQ=255) aTGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCt < 1:26113634/68‑1 (MQ=255) aTGTGGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCt < 1:14375584/68‑1 (MQ=255) tgtgGACTTTTCTACCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCtt > 1:10254208/1‑68 (MQ=255) gtgGACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCttt < 1:3394124/68‑1 (MQ=255) ggACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGt < 1:5567590/68‑1 (MQ=255) ggACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGt < 1:13116952/68‑1 (MQ=255) ggACTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGt < 1:12446476/68‑1 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGtt > 1:29089298/1‑67 (MQ=255) aCTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGtt < 1:19172981/67‑1 (MQ=255) cTTTTCTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTAc > 1:8637665/1‑68 (MQ=255) cTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAAt < 1:26690809/68‑1 (MQ=255) cTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAAt < 1:18262723/68‑1 (MQ=255) cTGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAAt < 1:17791583/68‑1 (MQ=255) tGCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATg < 1:4815605/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGTTACTCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGc < 1:26360765/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGc < 1:394834/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGc < 1:23618298/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAAt > 1:12795630/1‑66 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAAt > 1:15447925/1‑66 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAAt > 1:22591137/1‑66 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGc < 1:13535181/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGc < 1:24464471/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGc < 1:2935513/68‑1 (MQ=255) gCCGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGc < 1:21553467/68‑1 (MQ=255) cgcgATTATAGACACTTCTGCTACGCGTTTTTCTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCt < 1:20426374/64‑1 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCtt > 1:20958250/1‑68 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCtt > 1:22308973/1‑68 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCtt > 1:2201313/1‑68 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCt < 1:9668729/67‑1 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCt < 1:8162073/67‑1 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCt < 1:7946662/67‑1 (MQ=255) cGTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCt < 1:25072102/67‑1 (MQ=255) gTGATTATAGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCttt < 1:28605311/68‑1 (MQ=255) tataGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTtaata < 1:3656055/68‑1 (MQ=255) tataGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTtaata > 1:10514665/1‑68 (MQ=255) tataGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTtaata < 1:21797938/68‑1 (MQ=255) tataGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTtaata < 1:16018593/68‑1 (MQ=255) taGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAg < 1:2528872/68‑1 (MQ=255) aGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGc > 1:23412748/1‑68 (MQ=255) aGACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGc > 1:15715438/1‑68 (MQ=255) gACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTtaa > 1:20165460/1‑62 (MQ=255) gACACTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCg > 1:769668/1‑68 (MQ=255) acacTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg > 1:16224814/1‑68 (MQ=255) acacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg > 1:27348727/1‑68 (MQ=255) acacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg > 1:4541819/1‑68 (MQ=255) cacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCggg < 1:7237577/68‑1 (MQ=255) cacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCggg < 1:16951836/68‑1 (MQ=255) cacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCggg < 1:12156469/68‑1 (MQ=255) cacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg < 1:28330857/67‑1 (MQ=255) cacTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgg < 1:2691694/67‑1 (MQ=255) acTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCgggg < 1:2394749/68‑1 (MQ=255) cTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGt > 1:27140790/1‑68 (MQ=255) cTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGt < 1:5335335/68‑1 (MQ=255) cTTTTGCTACGCGTTTTTGTCATGGCCTTGGTCCCGCTTTGTTACAGAATGATTTTAATAAGCGGGGt > 1:17256879/1‑68 (MQ=255) | ATAGCAAAGTGTGACGCCGTGCAAATAATCAATGTGGACTTTTCTGCCGTGATTATAGACACTTTTGTTACGCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGG > CP009273/66639‑66773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |