| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,266,039 | G→A | 6.4% | intergenic (+123/+166) | rdlC → / ← chaA | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC/calcium/sodium:proton antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,266,039 | 0 | G | A | 6.4% | 1927.1 / 72.4 | 616 | intergenic (+123/+166) | rdlC/chaA | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC/calcium/sodium:proton antiporter |
| Reads supporting (aligned to +/- strand): ref base G (195/362); new base A (28/10); total (225/391) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.31e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 627 total aligned reads displayed.
TAACGCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTGGTACAGGCTCGCA > CP009273/1265972‑1266106 | tAACGCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATg > 1:23694253/1‑68 (MQ=40) aaCGCCGTCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGa < 1:18997048/68‑1 (MQ=255) aaCGCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGa < 1:11396179/68‑1 (MQ=40) aaCGCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGa < 1:5389687/68‑1 (MQ=40) aCGCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGaa > 1:19393411/1‑68 (MQ=40) aCGCCGGCGTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCCTCCCTGAAATGTTTGCAATGaa > 1:22609034/1‑68 (MQ=255) cGCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAag < 1:931208/68‑1 (MQ=40) gCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAaga > 1:21471569/1‑68 (MQ=40) gCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAaga < 1:20832984/68‑1 (MQ=40) gCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAaga > 1:15263624/1‑68 (MQ=40) cGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAagag < 1:7736184/67‑1 (MQ=40) cGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAagag < 1:27961196/67‑1 (MQ=40) cGGCTTGGTGTGGATACTACGTCGAAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGt < 1:22095483/68‑1 (MQ=255) gtgGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCg > 1:11660704/1‑67 (MQ=40) ggATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCt < 1:18733898/68‑1 (MQ=40) gATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCtt > 1:2839341/1‑68 (MQ=40) aTACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCttt > 1:16643859/1‑68 (MQ=40) tactacGTCGCAATTCATCTTCCCTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCtttt < 1:20089763/68‑1 (MQ=255) tactacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCtttt < 1:27664073/68‑1 (MQ=40) tactacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCttt > 1:29832710/1‑67 (MQ=40) tactacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCttt > 1:25889594/1‑67 (MQ=40) tactacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCttt > 1:21762006/1‑67 (MQ=40) tactacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCttt > 1:11953688/1‑67 (MQ=40) tactacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCttt > 1:16063269/1‑67 (MQ=40) tactacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCttt > 1:18306243/1‑67 (MQ=40) tactacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCttt > 1:21232410/1‑67 (MQ=40) tactacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCttt > 1:17534609/1‑67 (MQ=40) actacGTCGCAATTCATCTTCACTTCCTCACTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTc > 1:5218448/1‑68 (MQ=255) ctacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCa > 1:2651553/1‑68 (MQ=40) ctacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCa > 1:5678402/1‑68 (MQ=40) ctacGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCa < 1:25220050/68‑1 (MQ=40) acGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAAc > 1:14317801/1‑68 (MQ=40) acGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAAc > 1:17800297/1‑68 (MQ=40) acGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAAc > 1:25637212/1‑68 (MQ=40) acGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAAc > 1:2888172/1‑68 (MQ=40) acGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAAc > 1:5876441/1‑68 (MQ=40) gCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACa > 1:13845506/1‑64 (MQ=37) gCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACa > 1:14636288/1‑64 (MQ=37) gCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACa > 1:6074132/1‑64 (MQ=37) aaTTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGtt < 1:3883905/68‑1 (MQ=35) aaTTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGtt < 1:26909746/68‑1 (MQ=35) tCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCa < 1:864671/68‑1 (MQ=35) tCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCa < 1:11118226/68‑1 (MQ=35) tCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCa < 1:1481079/68‑1 (MQ=35) tCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCa < 1:14059402/68‑1 (MQ=35) tCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTg > 1:22418493/1‑68 (MQ=37) ttcacttcaTCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGt < 1:24057529/68‑1 (MQ=40) ttcacttcaTCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGt < 1:10049291/68‑1 (MQ=40) ttcacttcaTCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGt < 1:19687486/68‑1 (MQ=40) ttcacttcaTCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGt < 1:16285599/68‑1 (MQ=40) ttcacttcaTCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGt < 1:9014841/68‑1 (MQ=40) cacttcaTCCCTGAAATGTTTGCATTTAAGAGTACATTCCGTCTTTTCAACAGCTGTTGCAGTGGttt < 1:8312968/68‑1 (MQ=11) cacttcaTCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGttt < 1:1816045/68‑1 (MQ=40) cacttcaTCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGttt < 1:15734267/68‑1 (MQ=40) acttcaTCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTc > 1:27061366/1‑68 (MQ=40) cttcaTCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCg < 1:2972920/68‑1 (MQ=255) ttcaTCCCTGAAATGTTTGCAATTAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGt > 1:16402438/1‑68 (MQ=255) tcaTCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGt > 1:5539982/1‑67 (MQ=18) aTCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCa > 1:18432149/1‑68 (MQ=255) cccTGAACTCTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAgg < 1:22862579/68‑1 (MQ=14) cccTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAgg < 1:26748292/68‑1 (MQ=255) cccTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAgg < 1:12140315/68‑1 (MQ=255) cccTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAgg < 1:6688568/68‑1 (MQ=255) cccTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAgg < 1:24303019/68‑1 (MQ=255) cccTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAgg < 1:15894489/68‑1 (MQ=255) cTGAAATGTTTGCTATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:9758234/68‑1 (MQ=255) cTGAAATGTTTGCAATTAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:25033525/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:17857614/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:12754663/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:7260513/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:12989810/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:13339958/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:15019579/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:15510672/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:17085571/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:4900773/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:17970160/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:3197346/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:1928514/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:29498881/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:27422328/68‑1 (MQ=255) cTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgt < 1:2821315/68‑1 (MQ=255) gAAATGTTTGCAATGAAGATTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgtgt < 1:4245306/68‑1 (MQ=255) gAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgtgt < 1:6961472/68‑1 (MQ=255) gAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGgtgt < 1:10588970/68‑1 (MQ=255) aacgTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTgg > 1:24845429/4‑68 (MQ=255) aaTGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACATCTGTTGCAGTGGTTTCGTGCAGGGTGTgg < 1:10874965/68‑1 (MQ=255) aaTGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGtgtg < 1:3678941/67‑1 (MQ=255) aaTGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGtgtg < 1:11791781/67‑1 (MQ=255) aaTGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGtgtg < 1:14131144/67‑1 (MQ=255) aaTGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGtgtg < 1:23233507/67‑1 (MQ=255) aaTGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTgg > 1:6409429/1‑68 (MQ=255) aaTGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTgg > 1:20646544/1‑68 (MQ=255) aaTGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTgg > 1:20344780/1‑68 (MQ=255) aTGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTGGt < 1:8128928/68‑1 (MQ=255) aTGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTGGt < 1:26225739/68‑1 (MQ=255) aTGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTGGt < 1:10288046/68‑1 (MQ=255) aTGAAGAGTGCATTCCGGTTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTGGTACAGGCTc > 1:23441882/1‑67 (MQ=255) aTGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTGGTACAGGCTc > 1:4612219/1‑67 (MQ=255) gAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTGGTACAGGCTCGCa > 1:1227528/1‑68 (MQ=255) | TAACGCCGGCTTGGTGTGGATACTACGTCGCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATGAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGGTGTGGTACAGGCTCGCA > CP009273/1265972‑1266106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |