| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,104 | G→C | 7.4% | E643D (GAG→GAC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,104 | 0 | G | C | 7.4% | 774.8 / 7.8 | 292 | E643D (GAG→GAC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base G (178/82); new base C (3/20); total (183/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.27e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 309 total aligned reads displayed.
CCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCA > CP009273/1703037‑1703171 | ccgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:3484224/68‑1 (MQ=255)cagccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAGGCTGGAACAGCAACAGGCTAATGCCGAg < 1:6161315/66‑1 (MQ=255) tgccgTCGAAGCCGCTATAGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGc < 1:25442110/67‑1 (MQ=11) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:362596/67‑1 (MQ=255) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:15409642/67‑1 (MQ=255) cgTGGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCa < 1:2526865/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCa < 1:26729968/67‑1 (MQ=255) gTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGa < 1:18853685/68‑1 (MQ=255) gTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGa < 1:4207791/68‑1 (MQ=255) tCGGAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGGAGAGCCata > 1:21439661/1‑65 (MQ=14) tCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCGGGAACAGCAACAGGCTAATGCGGAGCCAGa > 1:5228502/1‑67 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:10026094/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:22759617/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaa < 1:7334489/67‑1 (MQ=255) gAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca < 1:6616971/68‑1 (MQ=255) gAAGCAGCTATCGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca < 1:29683046/68‑1 (MQ=11) atccGCTATTGCCCGTGACTATGCTCTCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaacaac < 1:27789146/66‑1 (MQ=14) agcagcTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaacaac < 1:28091006/68‑1 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:2956936/1‑68 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:28236279/1‑68 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:14212955/1‑68 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:11143603/1‑68 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:19197953/1‑68 (MQ=255) cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg < 1:13535917/67‑1 (MQ=255) agCTATCGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg < 1:12200827/66‑1 (MQ=14) tGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGGGCCAGAACAACAGGTGGAt > 1:14767596/1‑67 (MQ=255) tGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTTGAt > 1:18348897/1‑67 (MQ=255) tGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGAt > 1:28960628/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATcc > 1:7097564/1‑67 (MQ=255) ccGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGATCCAGAACAACAGGTCGATCcgc < 1:25320937/68‑1 (MQ=255) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:815414/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:15838796/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:14061783/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:24492271/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCcgc > 1:14687608/1‑68 (MQ=255) ccAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCaaa > 1:16193963/1‑68 (MQ=255) ccAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCaaa > 1:13863162/1‑68 (MQ=255) ccAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCaaa > 1:19416011/1‑68 (MQ=255) aGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAgcc > 1:28565270/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCGACAGGCTAATACCGAGCCAGAACAACAGGTCGATCCGCGCAAAgccg > 1:2097322/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATCCGCGCAAAgccg > 1:9532595/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAgcggc > 1:21722353/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAgccg > 1:6358035/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAgcggc > 1:19705535/1‑68 (MQ=255) gCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTc > 1:22654760/1‑68 (MQ=40) gCAAGCTGGAACAGCAACAGGCTAATGCCCACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGt < 1:20450264/67‑1 (MQ=255) aGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGaa < 1:16556961/68‑1 (MQ=40) aGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGaa > 1:23932338/1‑68 (MQ=255) gCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCgca > 1:5689021/1‑65 (MQ=255) gCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGac > 1:22964347/1‑66 (MQ=14) tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGACGcg > 1:25711666/1‑67 (MQ=14) tGGAACAGCAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 1:12075235/66‑1 (MQ=25) ggAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcgg < 1:4922465/68‑3 (MQ=255) gAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATACGCGCAAACCCGCCGTCGAAGcc > 1:18997706/1‑66 (MQ=255) aaCAGCAACAGGCTAATTCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:11820456/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:10312683/67‑1 (MQ=40) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:830920/67‑1 (MQ=40) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:23671790/67‑1 (MQ=40) aaCAGCAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:17935232/67‑1 (MQ=25) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:9114126/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:11867134/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:26071777/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:17106252/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:15098910/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:16648256/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:16459641/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGACGCCGCTa > 1:463400/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:13202030/1‑68 (MQ=255) cAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:22186545/68‑1 (MQ=25) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGCTCCGCGCACAGCCGCCGTCGAAGCCGCTAtt < 1:20106142/65‑1 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCTCGCAAAGCCGCAGTCGAAGCCGCTATTGc > 1:28759836/1‑67 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCGGCTATTGc > 1:15767560/1‑67 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:8699034/1‑67 (MQ=40) aaCAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGAAGCCGCTATTGc > 1:12724364/1‑67 (MQ=14) aaCAGGCTAATGCCGACCCAGAACAACAGCTCGATCCGCGCAAAGCCGACGTAGACGCCGCTATTGc > 1:29299809/1‑67 (MQ=11) gCTAATGCCGAGCCAGAACAACAGGTCGATCTGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCgcg > 1:9373107/1‑65 (MQ=14) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTCGAAGCCGCTATTGCCCgcgc > 1:18599378/1‑68 (MQ=14) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCgcg > 1:2578819/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcg > 1:3909639/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:1686081/1‑67 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:19955582/1‑67 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCgcg > 1:26950316/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCgcgc > 1:16895277/1‑68 (MQ=14) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:3102635/66‑1 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGcc > 1:3731109/1‑68 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCCGCTATTGCCCgcgc > 1:7532244/1‑67 (MQ=14) cTAATGCCGAACAAGAACAAGATGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:780530/65‑1 (MQ=11) atAATTCCGAGCCAGCACAACAGGTCGATCCGCGGAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGc < 1:10733295/66‑1 (MQ=14) atAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGAGc < 1:23946944/66‑1 (MQ=255) atAATGCCGACCCAGAACAACATGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:14553203/65‑1 (MQ=14) aaTGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaa > 1:27444221/1‑68 (MQ=255) aTGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa > 1:11014897/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCGAAAgc > 1:2254301/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:16328630/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAg > 1:29836984/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAg > 1:7009306/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:12444703/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGCCGCCGCTATTGCCCGCGCCaacg > 1:20597682/1‑65 (MQ=14) cGACCCAGAACAACAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc < 1:13608854/68‑1 (MQ=255) gCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa > 1:11359900/1‑68 (MQ=37) | CCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCA > CP009273/1703037‑1703171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |