| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,140 | C→A | 7.9% | V655V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,140 | 0 | C | A | 7.9% | 830.9 / 4.6 | 357 | V655V (GTC→GTA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base C (192/122); new base A (33/6); total (226/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.22e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 372 total aligned reads displayed.
GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAG > CP009273/1703073‑1703207 | aaGCTGGAACAGCAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCg < 1:13420360/67‑1 (MQ=25) aGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGaa > 1:23932338/1‑68 (MQ=255) gCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGac > 1:22964347/1‑66 (MQ=14) cTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg > 1:14090125/1‑67 (MQ=40) aaCACCAACAGCCTAATGCCGACCCAGAACCAGATGGTGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:29324647/65‑1 (MQ=2) aCAGCAACAGGCTAATGCCGAGCCATAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:18656132/67‑1 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGACGCGGCTa > 1:7693296/1‑68 (MQ=14) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCCGCTa > 1:22038047/1‑68 (MQ=14) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTa > 1:623572/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTa > 1:3892066/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:16392455/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:26071777/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:9114126/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:861928/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:26390483/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:16648256/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:11179586/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:1824107/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:17106252/1‑68 (MQ=40) aaCAGGCTAATGCCGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTg < 1:8242878/66‑1 (MQ=25) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGCTCCGCGCACAGCCGCCGTCGAAGCCGCTAtt < 1:20106142/65‑1 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCTCGCAAAGCCGCAGTCGAAGCCGCTATTGc > 1:28759836/1‑67 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCGGCTATTGc > 1:15767560/1‑67 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:22903992/1‑67 (MQ=40) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:1165033/1‑67 (MQ=40) aGGCTATTCCCGAACCAGATCAACAGCGCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:10310361/68‑1 (MQ=11) gCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCTAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:3457791/1‑67 (MQ=11) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCgcg > 1:2578819/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcg > 1:7155646/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:12428618/1‑67 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:129325/1‑67 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCgcg > 1:26950316/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCgcgc > 1:16895277/1‑68 (MQ=14) cTAATTCCGATCCAGAACAAGAGGTCGATCCGCGAAAAGCGGCCGTCGAAGCCGCTATTGCCCGAg < 1:12100024/66‑1 (MQ=14) cTAATGCCGCCCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:21406996/65‑1 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGcc > 1:3731109/1‑68 (MQ=255) cTAATCCCGACCCAGAACAACAGGTAGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:13866507/65‑1 (MQ=11) aaTGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCa > 1:4786446/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCaaacg > 1:29740389/1‑65 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:27497774/1‑68 (MQ=255) accAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCCCGCa > 1:19743055/2‑68 (MQ=11) accAGAACAACAGGTCGAACCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa < 1:6740537/67‑1 (MQ=16) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:15561892/1‑68 (MQ=35) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:24242845/1‑68 (MQ=25) cAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:27987228/68‑1 (MQ=255) agaacaGGTGGAGGCGCGCATAGGCGCCTTCGATCCCGCTATTGCCCGAGCCAAAGCGCGCAAACgg < 1:22553304/65‑1 (MQ=9) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGCCAAAGCCCGCAAACgg > 1:5851252/1‑67 (MQ=11) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAACCggg > 1:24371178/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCggg > 1:28326041/1‑68 (MQ=25) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:2168478/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:11030323/1‑68 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa > 1:25162538/1‑67 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAAc > 1:14327931/1‑68 (MQ=25) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGacc > 1:15268963/1‑66 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc > 1:22541871/1‑68 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc < 1:12715733/68‑1 (MQ=255) caGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACa > 1:14713164/1‑68 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCGAAAGCGAGCAAACGGGAACa > 1:11447180/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGGACa > 1:20713385/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGACCa > 1:5748001/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa > 1:25366582/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAAAGGGAACa > 1:10896493/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCCCAGGCGCGCAAACGGGACCa > 1:16837378/1‑67 (MQ=14) gtggATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:22704572/65‑1 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGct > 1:11716779/1‑67 (MQ=255) tCGATCCGCGCAAAGCGGCAGTGGAAGCGGCTATTGCCCGAGCGAACGCCAGCAAGCGGGAACAGCa > 1:23284713/1‑67 (MQ=2) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAACAGCaa > 1:1006120/1‑68 (MQ=25) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:25543662/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:25088059/1‑67 (MQ=255) gcGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:1502135/66‑1 (MQ=255) aTCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:27859152/1‑68 (MQ=255) aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAGGCGCGCAAACGGGAACAGCACCCg > 1:17728436/1‑68 (MQ=255) tCCTCGTAAAACAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:7900487/68‑1 (MQ=17) tCCTCGCAAACCGGCCGTCGAAGCAGCTATAGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:1362668/68‑1 (MQ=17) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGACCAGCAACCg > 1:13234245/1‑67 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:871725/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:10615099/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATAGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:18203559/68‑1 (MQ=255) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:22195432/1‑66 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt > 1:9380124/1‑68 (MQ=255) aaaGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATg < 1:20589311/67‑1 (MQ=255) aaGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCg > 1:20358801/1‑68 (MQ=255) aaGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCg > 1:17284665/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCCACCGGGAACAGCAACCGGCTAATGCGGa > 1:28879954/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGACCAGCCACCGGGTAATGCGGa > 1:3181783/1‑68 (MQ=17) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:24840064/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:5397689/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:29552577/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAACAACCGGCTAATGCGGa > 1:28961/1‑68 (MQ=255) cgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAg < 1:16256807/67‑1 (MQ=255) cgccgTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGc < 1:19010911/68‑1 (MQ=255) agccgTCGAAGCCTCTATTGCCCGAGCCAAAGCGCGCTATCGGGAACAGCAACCGGCTAATGCGGAg < 1:16094648/66‑1 (MQ=17) cgTTGAAGCCGCTATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:11970073/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:11852626/67‑1 (MQ=255) cgTCGAAGCAGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:27075087/67‑1 (MQ=255) gTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCaga < 1:4652189/68‑1 (MQ=255) gTCGAAGCCGCTATTGCCCGAGCCTTAGCGGTCAAACGGTAACAGGAACCGGCTAATGCGGAGCCaga < 1:21093358/68‑1 (MQ=18) cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaat < 1:19250938/68‑2 (MQ=255) cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag > 1:2988806/1‑68 (MQ=255) cGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaa < 1:4044987/67‑1 (MQ=255) | GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAG > CP009273/1703073‑1703207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |