| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,146 | C→A | 5.9% | A657A (GCC→GCA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,146 | 0 | C | A | 5.9% | 848.6 / 5.0 | 361 | A657A (GCC→GCA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base C (206/118); new base A (2/24); total (219/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.56e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 381 total aligned reads displayed.
TGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGG > CP009273/1703079‑1703213 | tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATACGCGGAAAGCCGACGACGAAccc > 1:27940778/1‑68 (MQ=14) gAACAGCAACAGGCTAATGCCGAGCCAGAACAACACGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:25337265/68‑1 (MQ=255) aaCAGCAACAGGCTAATTCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:11820456/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:20135838/67‑1 (MQ=40) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:7024018/67‑1 (MQ=40) aaCAGCAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:17935232/67‑1 (MQ=25) aaCACCAACAGCCTAATGCCGACCCAGAACCAGATGGTGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:29324647/65‑1 (MQ=2) aCAGCAACAGGCTAATGCCGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:25398341/67‑1 (MQ=25) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTa > 1:623572/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:1824107/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:2513167/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:16459641/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGCAGCCGCTa > 1:19239183/1‑68 (MQ=14) aGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGACGTCGAAGCCGCTAtt > 1:5803958/1‑68 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:22903992/1‑67 (MQ=40) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:8699034/1‑67 (MQ=40) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCAGCAGTAGAAGCAGCTATTGc > 1:4181218/1‑67 (MQ=14) aCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGccc > 1:28203473/1‑68 (MQ=40) aCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGCCGCCGCTATTGccc > 1:18535741/1‑68 (MQ=14) aGGCTATTCCCGAACCAGATCAACAGCGCGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:10310361/68‑1 (MQ=11) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcg > 1:3909639/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:129325/1‑67 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:12428618/1‑67 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCgcg > 1:20484237/1‑65 (MQ=14) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGcc > 1:15098066/1‑68 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCCGCTATTGCCCgcgc > 1:7532244/1‑67 (MQ=14) cTAATGCCGAGCCAGAACAACAGGCGGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:14519231/66‑1 (MQ=255) atAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGAGc < 1:23946944/66‑1 (MQ=255) atAATCCCGACCCAGCAAAACAGGGCGATCCGCGCAAACCAGCCGTAGAAGCCGCTATTGCCCGa < 1:6642721/64‑1 (MQ=2) aTGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCaaa > 1:11014897/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCaaacg > 1:29740389/1‑65 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:20616685/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:13687720/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:25904109/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:15887/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAg > 1:28699410/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAgc > 1:19978400/1‑68 (MQ=255) ccGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:7884254/1‑67 (MQ=255) cGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgcgc > 1:16879870/1‑68 (MQ=255) cGACCCAGAACACCAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc < 1:16982594/68‑1 (MQ=11) cGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc < 1:8200835/68‑1 (MQ=255) gCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa > 1:11359900/1‑68 (MQ=37) accAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa < 1:5060571/67‑1 (MQ=18) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCaa > 1:5617194/1‑68 (MQ=25) cAGAACACCAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa < 1:10548319/66‑1 (MQ=255) cAGAACAACCGGGCGATCCGCGCAACGCCGCCTGAGAATCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:231978/68‑1 (MQ=11) aacaacAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACgg > 1:1342509/1‑68 (MQ=255) agaacaGGTGGAGGCGCGCATAGGCGCCTTCGATCCCGCTATTGCCCGAGCCAAAGCGCGCAAACgg < 1:22553304/65‑1 (MQ=9) acaccaGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACg < 1:28949402/66‑1 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAACCggg > 1:26313372/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACcgg > 1:20830948/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:24265051/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:2213406/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACgg > 1:18761739/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCCAAGCGCGCAAGCGGGa > 1:24928103/1‑67 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc < 1:12715733/68‑1 (MQ=255) caGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACa > 1:11908525/1‑68 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAACa > 1:14164249/1‑67 (MQ=25) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa > 1:24685907/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAACCGGGAGCa > 1:4740502/1‑67 (MQ=14) gtggATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:22704572/65‑1 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:26662626/1‑68 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:3516984/1‑68 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:21874022/1‑68 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCa > 1:10749543/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCa > 1:21116529/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCGAACGCCCGCAAGGGGGAACAGCa > 1:8333439/1‑67 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAACAGCaa > 1:1006120/1‑68 (MQ=25) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:25543662/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:27061332/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:27435965/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAACGGGAACAGCa > 1:13309272/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTAGCCGCCGCTATTGCCCGCGCGAAGGCCCGAAAACGGGAACAGCa > 1:8873417/1‑67 (MQ=14) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAccc > 1:17353206/1‑68 (MQ=255) aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:28804856/1‑68 (MQ=255) aTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAGGCGCGCAAACGGGAACAGCACCCg > 1:17728436/1‑68 (MQ=255) tCCTCGTAAACCCGCCGTCGAAGCCGCTATAGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:15362805/68‑1 (MQ=17) tCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:11692058/68‑1 (MQ=255) tCCGCGGAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:19723419/68‑1 (MQ=255) tCCGCGCAATGCCGGCTGCGTAGCATATCTTTCACGAGCCAAAGCGCGCAAACGGGAACAGCAACCg < 1:27739682/67‑1 (MQ=12) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:13945033/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:12074322/68‑1 (MQ=255) tCCCCGCAAAACCGCCGTCGAAGCAGCTATGGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:11603651/68‑1 (MQ=14) gcAAATCGGGCGTGGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt < 1:3758559/68‑1 (MQ=17) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt > 1:9380124/1‑68 (MQ=255) aaGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCGGGAACAGCAACCGGCTAATGCg > 1:16822288/1‑68 (MQ=11) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGACCAGCCACCGGGTAATGCGGa > 1:3181783/1‑68 (MQ=17) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:17123067/1‑68 (MQ=255) ccgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAg < 1:9211447/68‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTTATGCGGAGCCa < 1:22236333/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:16136062/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:11134564/67‑1 (MQ=255) cgTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:15592711/67‑1 (MQ=255) gTCGAAGCAGCTATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCaga < 1:21483871/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag > 1:2988806/1‑68 (MQ=255) cGAAGCCGCTATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag < 1:2352751/68‑1 (MQ=255) gAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:16319106/68‑1 (MQ=255) aaGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:14907669/67‑1 (MQ=255) aGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAAc < 1:29485946/68‑1 (MQ=255) ccGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg > 1:22521136/1‑68 (MQ=255) | TGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGG > CP009273/1703079‑1703213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |