| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,295 | T→A | 10.2% | V707E (GTA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,295 | 0 | T | A | 10.2% | 863.5 / 45.9 | 321 | V707E (GTA→GAA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (130/155); new base A (29/6); total (159/162) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.47e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 345 total aligned reads displayed.
GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCA > CP009273/1703228‑1703360 | gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:8064320/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:3523986/1‑68 (MQ=255)gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:2601617/1‑68 (MQ=255)ccTGCCGTCGAAGCTGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:19112088/67‑1 (MQ=14)ccTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:4675955/67‑1 (MQ=255) cTGCCGTCGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:11181299/68‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:17266957/66‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAATCTGGAACAGCAACAGGCTAATGCGGt < 1:8465901/66‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:12204851/66‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:9428635/67‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAc < 1:1196299/68‑1 (MQ=255) agCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:5408020/66‑1 (MQ=255) gCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTAcc < 1:5170736/68‑1 (MQ=255) ccGTCTAAGAGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:23088362/68‑1 (MQ=255) cGTCGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:13634057/67‑1 (MQ=255) cGTCGAAGCGGCTATTTGACGCGCCAAAGCACGAAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:2754863/67‑1 (MQ=18) tgAAGCTGCTATAGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaag < 1:7268680/67‑1 (MQ=14) ggAAGCAGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa < 1:2385110/66‑1 (MQ=14) cGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa < 1:5536235/67‑1 (MQ=255) ccgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg > 1:15775600/3‑68 (MQ=255) tgCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:13171560/66‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:17751771/66‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:19252252/66‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:26577965/66‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:5917924/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:26341123/67‑1 (MQ=255) cgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:9357295/66‑1 (MQ=255) agCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:2674440/66‑1 (MQ=255) tgcccgggccatagcgCGCATGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATc < 1:21882690‑M2/52‑1 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:28596253/1‑67 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:11613702/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:9543807/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:3600610/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:20729610/1‑67 (MQ=255) aCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCggc > 1:20451032/1‑68 (MQ=255) gcgcCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCgcgc > 1:22439738/1‑68 (MQ=255) ccaaagcgCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCaaa > 1:6172333‑M2/9‑68 (MQ=255) caatgctCGCAAGCTGGAACAGCAACATGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCaaa < 1:14580800‑M2/60‑1 (MQ=255) cAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAg < 1:19768939/68‑1 (MQ=255) aaaGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGc < 1:499019/68‑1 (MQ=255) gcgCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTTGATCCGCGCAAAGCGGc > 1:12970852‑M2/4‑68 (MQ=255) gCACGCAATCTGGAACAGCAACAGGCTAAAGCGGTACCAGAAGAACAGGTTGAACCGCGCAAAGCGGc > 1:20046924/1‑68 (MQ=17) gCACGCAAGCTGGAACCGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:17988252/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:29328845/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:2898815/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGc > 1:29477457/1‑68 (MQ=255) ccGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCa < 1:23676433/66‑1 (MQ=255) aCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCa < 1:18273692/67‑1 (MQ=255) cTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATc < 1:14229923/46‑1 (MQ=255) cTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgc > 1:20214103/1‑68 (MQ=255) cTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGCcg > 1:3795941/1‑67 (MQ=11) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:15471186/68‑1 (MQ=255) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:28241758/68‑1 (MQ=255) tGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCcgcg < 1:2403922/68‑1 (MQ=255) ggAACAGCAACCGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCgg < 1:16539302/68‑1 (MQ=255) caCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCt < 1:15147964/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:24620106/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGc < 1:14701010/67‑1 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:26845573/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:9032504/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:24911691/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:12890431/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:1347883/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTAGACGCGGCTa > 1:10696552/1‑68 (MQ=14) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTTGCCGCGGCTa > 1:12331314/1‑68 (MQ=17) aCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCGGCTa > 1:12721331/1‑68 (MQ=14) aGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAtt > 1:16809324/1‑68 (MQ=255) aaCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGc > 1:1004646/1‑67 (MQ=255) aaCAGGCTAATGCGGTACCAGAACAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:23262638/68‑1 (MQ=255) aaCAGGCTAATGCGGAACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGcc < 1:29091703/68‑1 (MQ=255) aaCAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCAGTAGCCGCGGCTATTGc > 1:9831134/1‑67 (MQ=17) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:13952509/1‑66 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:3220770/1‑66 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:443771/1‑66 (MQ=255) gCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:18856583/1‑66 (MQ=255) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgc > 1:28354881/1‑66 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCCAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc > 1:4162834/1‑67 (MQ=255) cTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCcgcg < 1:22180169/66‑1 (MQ=255) cTAAAGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCgcgc > 1:21371156/1‑67 (MQ=255) tGCGTTACCAGAACAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:24207101/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:215425/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:17194194/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:17672098/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:1792863/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:18043445/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:1958116/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:428163/68‑1 (MQ=255) tGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg < 1:25570236/68‑1 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:2874078/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:2282701/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:6785296/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:7406473/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:7665504/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:25421092/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:26974953/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:14970456/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:29654514/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:11043865/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAgg > 1:1067147/1‑67 (MQ=255) gCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCCCCTATTGCCCCCGCTCAgg > 1:51090/1‑67 (MQ=25) | GCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCA > CP009273/1703228‑1703360 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |