BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	699831 =	388 (0.820)	23 (0.060)	7/96	NT	7.2%	coding (432/1947 nt)	nagE	fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components
*	?	CP009273	699861 =	264 (0.650)	23 (0.060)	7/96	NT	7.2%	coding (462/1947 nt)	nagE	fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components

Only 100 of 123 total aligned reads displayed.

AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/699903‑699831

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC  >  CP009273/699861‑699927

AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATG                                                                           >  1:16238890/1‑67

  AAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC                                                                        >  1:16236619/1‑68

  AAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC                                                                        >  1:23904554/1‑68

  AAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC                                                                        >  1:34337969/1‑68

  AAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCC                                                                        >  1:1557929/1‑68

   acCGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:15154768/66‑1

   AACTATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:33556227/68‑1

   AACGATCCACTCGCCGCCTGCATGGCTAGCGTGCTGTACCGGCGGCCAGACGAAACCAAAAATGGCCG                                                                       <  1:6508483/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:34676178/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:16871606/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:35689922/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:18549837/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:35591053/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:20160179/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:35575143/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:21724519/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:22695964/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:10369646/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:3446309/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:26926578/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:3347877/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:27323844/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:27608851/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:32028030/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:29314468/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:13266746/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:4994222/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:15770078/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:15194265/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:15119912/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:4147181/68‑1

   AACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       <  1:15094896/68‑1

    ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGCCGTAACCAAATATGGCCG                                                                       >  1:20300196/1‑67

    ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       >  1:11238603/1‑67

    ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       >  1:35484052/1‑67

    ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCG                                                                       >  1:21688036/1‑67

    ACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCCGCCAGACGTAACCAAAAATGGCCGC                                                                      >  1:797517/1‑68

     CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC                                                                     <  1:2638942/68‑1

     CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC                                                                     <  1:7582605/68‑1

     CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC                                                                     <  1:3304975/68‑1

     CGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC                                                                     <  1:29991535/68‑1

        TCCCCTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGG                                                                   <  1:11585255/67‑1

        TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT                                                                  <  1:22213933/68‑1

        TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT                                                                  <  1:27259983/68‑1

        TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT                                                                  <  1:387625/68‑1

        TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGT                                                                  <  1:24629000/68‑1

        TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGG                                                                   <  1:30518955/67‑1

        TCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGG                                                                   <  1:13335415/67‑1

              CGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCA                                                            <  1:28867061/68‑1

               GCCGCCTGCATGGCTAGCCTGCTGTACCCGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC                                                           <  1:27964491/68‑1

               GCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC                                                           <  1:15849700/68‑1

               GCCGCCTGCATGGATAGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCAC                                                           <  1:13200161/68‑1

               GCCGCCGGCAGGGATAGCGTGCTGTACCGGCGGCCAGACTAAACCAAAAATGGCCGCCGGTACAGCAC                                                           <  1:16258428/68‑1

                 CGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACG                                                          <  1:28312712/67‑1

                  GCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT                                                        <  1:16893850/68‑1

                  GCCTGCATGGATAGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT                                                        <  1:14884591/68‑1

                  GCCTGCAGGCATCGCGTGCTGTACCGGCGGCCAGACGTAACCAAAACTGGCCGCCGGTACAGCACGCT                                                        <  1:36321231/68‑1

                  GCCTCCATGGATCGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT                                                        <  1:20253302/68‑1

                  GCCGGCATGGATACCGCGCTCTCCCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCT                                                        <  1:31092494/68‑1

                    cgcCATGGAACGCGGGCTGTACCGGCGGCCAGACGTAACCAAAAATGCCCCCCGGTACAGCACGCTAT                                                      <  1:16358388/65‑1

                    CTGGATCGATAGCGGGCGGTACCGGCGGCCAGACGTAACCAAAAATCGCCGCCGGTACAGCACGCTA                                                       <  1:16076601/67‑1

                    CTGCATGGATCGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT                                                      <  1:24997515/68‑1

                    CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT                                                      <  1:33278711/68‑1

                    CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT                                                      <  1:26982829/68‑1

                    CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTAT                                                      <  1:17102300/68‑1

                    CTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTA                                                       <  1:36601530/67‑1

                    CTGCAGGGATAGCGTTCTTTACCGGCGTCCAGACGTACCCAAAAATGCCCGCCGGTACAGCACGCTAT                                                      <  1:20231383/68‑1

                                             CGGCCAGACGTAACCAAAAATGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTT                             >  1:9506861/1‑68

                                                               AATGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGT           <  1:11872972/68‑1

                                                                cgGGCCGCCGGTACAGCACGCTAGCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGg           <  1:2795585/65‑2

                                                                 TGGCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTC         <  1:29791547/68‑1

                                                                   GCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCG       >  1:310188/1‑68

                                                                   GCCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCG       >  1:21306666/1‑68

                                                                    CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG      >  1:19717584/1‑68

                                                                    CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG      >  1:37998818/1‑68

                                                                    CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG      >  1:35719957/1‑68

                                                                    CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG      >  1:24712429/1‑68

                                                                    CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG      >  1:10350088/1‑68

                                                                    CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG      >  1:27910781/1‑68

                                                                    CCGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGG      >  1:28245/1‑68

                                                                     CGCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGAGCGTTTCTGCGGGCGCGCTGGGTTCCGG      <  1:2934772/67‑1

                                                                      GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA    <  1:14038153/68‑1

                                                                      GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA    <  1:6042823/68‑1

                                                                      GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA    <  1:36059851/68‑1

                                                                      GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA    <  1:38805913/68‑1

                                                                      GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA    <  1:14694285/68‑1

                                                                      GCCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCAGTA    <  1:14324745/68‑1

                                                                       CCGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTA    >  1:23419680/1‑67

                                                                        CGGTTCAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC  <  1:2372573/68‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTGCGGTATC  <  1:31323829/68‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC  <  1:28985202/68‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC  <  1:32151882/68‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC  <  1:35044315/68‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC  <  1:8414041/68‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC  <  1:30410328/68‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT   <  1:36541720/67‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT   <  1:14507357/67‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT   <  1:15927110/67‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT   <  1:22768952/67‑1

                                                                        CGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTAT   <  1:10417658/67‑1

AGAAACGATCCACTCGCCGCCTGCATGGATAGCGTGCTGTACCGGCGGCCAGACGTAACCAAAAATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/699903‑699831

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgccGGTACAGCACGCTATCCATGCAGGCGGCGAGTGGATCGTTTCTGCGGGCGCGCTGGGTTCCGGTATC  >  CP009273/699861‑699927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.