New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1092557NA (NA)9 (0.020)
+GC		 5/108 NT NA intergenic (+272/+464) ycdU/serX putative inner membrane protein/tRNA‑Ser
?CP009273 = 1092559 NA (NA)intergenic (+274/+462) ycdU/serX putative inner membrane protein/tRNA‑Ser

TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  CP009273/1092559‑1092498
                         ||                                                              
TGCGTTCACGGTCTGTCCAACTGGCGCCCGCCAGGTGGCCAGCCCGTGCACGCAGTGAGCGGGCTGC                        >  1:13688078/1‑67
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGGCCGTGAACGCAGTGAGCGGGCTGC                        >  1:3505516/1‑67
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGCCCGTGAACGCAGTGAGCGGGCTGC                        >  1:9490498/1‑67
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGCACGCAGTGCGCGGGCTGC                        >  1:27934052/1‑67
  CGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGCCCGTGCACGCAGTGCGCGGGCTGCCC                      >  1:6378858/1‑67
      CACGGTCTGTCCAACTGGCGCCAGCCCGTTGGGCAGACCGGGAACGCAGTGAGCGGGCTGCCCGCAGG                 >  1:5229/1‑68
      CACGGTCTGTCCAACTGGCGCCAGCCAGTTGGCCAGACCGGGCCCGCAGTGAGCGGGCTGCCCGCAGG                 >  1:28586197/1‑68
        CGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC               >  1:5793797/1‑68
           TCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA             >  1:25292306/1‑67
                     gGGCGCCAGCCAGGTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  1:18196586/67‑1
                         ||                                                              
TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGT  <  CP009273/1092559‑1092498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.