| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2402276 | NA (NA) | 11 (0.030) | 3/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 101 total aligned reads displayed.
CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2402203‑2402276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccggaTGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < CP009273/2402283‑2402218 CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:1061431/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:21706993/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:23496384/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:19329869/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:2350735/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:2709276/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:34648926/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:15115760/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:35341303/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:37577459/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:14177032/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:13499402/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:13694134/68‑1CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACT < 1:5799046/68‑1 AGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTG > 1:5505893/1‑67 AGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTG > 1:15840016/1‑67 GCTTTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:7237590/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTTGTTTTCATCAGTTGTAATCTTATTTTCACTGC < 1:6368479/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:30778823/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:21184319/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:8931167/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:23086103/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:8460715/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:23967123/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:25447080/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:28311438/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:32825391/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:33595258/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:33641988/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:5549690/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:39015524/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:36014664/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:37647936/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:20996663/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:10714438/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:12248482/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:15328963/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:1607057/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:16882688/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:17203766/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCC > 1:2084/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:31988520/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:38575897/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:5108808/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:12359375/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:3528439/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:15269243/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:15284986/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:15591673/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:20882446/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:29258720/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:11872799/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:6481030/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:21123097/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:7628642/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:26078515/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:23369186/67‑1 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCATAATTTCACTGCC > 1:21957286/1‑68 GCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATATTAATTTCACTGCC > 1:33442515/1‑68 GCTGTATTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC > 1:28243677/1‑67 GCTGACTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGC < 1:5223674/67‑1 TGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGG > 1:36131489/1‑68 TGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGG < 1:2455371/68‑1 TGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCG < 1:25593768/67‑1 TGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCG < 1:33122964/67‑1 TGTCTTTGAGCAAGATCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGG > 1:28035572/1‑68 GTCTTTGAGCAAGTTGGGGAGATTCCTTTCTCGGTATCATCAGCTGTAATCTTAATTTCACTGCCGGA < 1:32022901/68‑1 TTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGA > 1:20509473/1‑68 TCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTTAGATT > 1:13311767/1‑68 TCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGATT > 1:25929446/1‑68 TCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGATT > 1:28947009/1‑68 TCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGATT > 1:22998457/1‑68 TCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGATT > 1:15087331/1‑68 TCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGATT > 1:35411082/1‑68 TCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGATT > 1:3550125/1‑68 TCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGATT > 1:14220013/1‑68 TCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAAGTAAGATT > 1:27845268/1‑68 TGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGATTAC > 1:37271914/1‑68 TTTCACTGCCGGATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAAC > 1:24414383/1‑68 ACTGCCGGATGCAATCTCCGGCAGTGAATTTAAGATTACAGCTGATGATAACCAGAAAGGAACCGCGC > 1:13681928/1‑68 ACTGCCGGATGCAATCTCCGGCAGTGAAAGTAAGATTACCGCTGATGATAACCAGAAAGGAAACGCG > 1:34571061/1‑67 tCCGGATGCAATCTCCGGCAGTGAAATTAAGATTACATCTGATGATAACCAGAAAGTAAACGCGCGAA < 1:8150463/67‑1 GCCGGATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAA < 1:17718531/68‑1 GCCGGATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAA < 1:29228637/68‑1 CGGATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACT > 1:17078232/1‑68 CGGATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACT < 1:26094736/68‑1 CGGATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACT < 1:11120241/68‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCTGAAAGGAAACGCGCGAACTTG < 1:5978411/67‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < 1:14179074/67‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < 1:10397038/67‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < 1:2516305/67‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < 1:27786624/67‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < 1:5289272/67‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < 1:37259996/67‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < 1:4714230/67‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < 1:38376371/67‑1 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTT > 1:1597988/1‑66 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTT > 1:35912879/1‑66 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTT > 1:12751998/1‑66 ATGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTT > 1:36241748/1‑66 CGAGCTGTCTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2402203‑2402276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccggaTGCAATCTCCGGCAGTGAAATTAAGATTACAGCTGATGATAACCAGAAAGGAAACGCGCGAACTTG < CP009273/2402283‑2402218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |