| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2787501 | NA (NA) | 5 (0.010) | 5/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
Only 100 of 147 total aligned reads displayed.
CCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2787428‑2787501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgggtCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGAT < CP009273/2787551‑2787485 cctGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGG < 1:25519962/65‑1CCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGG < 1:6555448/68‑1 CAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGC < 1:19517258/68‑1 CAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGC < 1:26744525/68‑1 CAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGC < 1:29528642/68‑1 AGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCC > 1:587507/1‑68 AGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCC > 1:3769205/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:19205827/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:22928284/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:28810974/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:35469476/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:15842909/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:37411324/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:15062135/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:4934478/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:13943750/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:11203556/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:11193526/1‑68 GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG > 1:9772843/1‑68 gCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGCAGAAATCTATGTTGGCCGG < 1:7381387/66‑1 TCGGATACGGCGTTTAAGCCGCATCCGACAATCTGTACGTTAACAGGAAAAAATCTATGTTGGCCGG < 1:8980401/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:4010388/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:33832357/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:5046565/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:2177708/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:10463283/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:16065658/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:18220741/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:19593933/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:10158446/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:10479625/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:8285540/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:5486600/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:13708317/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:14156473/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:33087567/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:3145623/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:30565132/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:25713319/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:2241822/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:23085081/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:20459680/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG < 1:34505589/66‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG < 1:6890146/66‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAAAAATCTATGTTGGCCGG < 1:8980382/67‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACACGAAGAAATCTATGTTGGCCGGG > 1:15399174/1‑68 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTCAACAGGAAGAAATCTATGTTGGCCG < 1:6777085/66‑1 TCGGATAAGGCGGTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG < 1:9683170/67‑1 TCGGATAAGGCGATTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG > 1:15455297/1‑68 CGGATAAGGCGTTTACGCCGCATCCGACAGTCTGTACGTGAACAGGAAGTAATCTATGTTGGCCGGG < 1:18403168/67‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:3180369/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:4642459/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:32836715/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:33824890/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:18371729/68‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG < 1:18159662/67‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG < 1:8340533/67‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGG < 1:26202145/67‑1 GGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGGGAACAGGAAGAAATCTATGTTGGCCGGGT < 1:21402654/67‑1 CGCCGCATCCGACAATCTGTACGTGACCAGGAAGAAATCTATGTTGGGCGGGTCACGCGTATTAGTGT > 1:23742814/1‑68 CAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGTCACGCGTATAATTGTTATTGATTCTTT > 1:32382399/1‑68 GCCGGGTCACGTGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:30379557/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAg > 1:22479335/1‑67 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:21033258/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:5482419/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:19174117/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:14567252/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:38932785/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC > 1:20893521/1‑68 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:12510851/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:11919788/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:11455554/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:20367538/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:3563499/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:3516116/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:27659999/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:27710955/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:28020635/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:17459539/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:29741574/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:31211381/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:31540838/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:22202892/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:33623461/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:24643569/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:24394697/68‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAA < 1:38220830/67‑1 GCCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAA < 1:28174624/67‑1 GCCGGGTCACGCGGATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 1:6006630/68‑1 CCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACA > 1:32757784/1‑68 CCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACA > 1:26736992/1‑68 CCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACA > 1:16910576/1‑68 CCGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACA > 1:36730841/1‑68 CGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACAT < 1:26307090/68‑1 CGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACA < 1:23895419/67‑1 CGGGTCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACA < 1:33021768/67‑1 TCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGAT > 1:34149124/1‑68 TCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGA < 1:32383711/67‑1 TCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGA < 1:34866414/67‑1 TCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGA < 1:16027543/67‑1 CCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2787428‑2787501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgggtCACGCGTATAATTGTTATTGATTCTTTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGAT < CP009273/2787551‑2787485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |