| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2974100 | NA (NA) | 8 (0.020) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 218 total aligned reads displayed.
CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2974023‑2974100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT < CP009273/2974105‑2974039 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG > 1:27536626/1‑68 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGG > 1:12459706/1‑68 AAGGCTGAATAAGGAACGAGACAAACGCATCAACGGCAAAGTGCCCAATCTCTATTAACGAAAAAAGG > 1:5926570/1‑68 tGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:13757172/67‑1 AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:29410950/68‑1 AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:2461445/68‑1 AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:15845790/68‑1 GCTGAATAAGGTACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:11811964/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:15667681/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:21909518/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:37646160/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:39073121/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:19978303/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:4908087/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:30318460/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:6230804/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:14708776/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:11296342/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:12008306/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:8740102/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:8244843/1‑68 CTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGC < 1:33758415/66‑1 CTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGC < 1:13079747/66‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:22482259/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:38324461/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:23357134/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:7086573/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:30153360/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:30676496/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:25654991/67‑1 GAATAAGGAACGAGTCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:35946919/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:3584570/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:2966383/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA > 1:35990797/1‑68 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:37186054/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:28680578/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:3862460/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:38758173/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA > 1:4722831/1‑68 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:16586222/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:1643796/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:5049715/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:30937017/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:11043328/68‑1 ATAAGGAACGAGACAACCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCAGGATG > 1:5548879/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCATGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:32779659/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:18944308/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:23738675/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:16748808/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:25220910/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:28862903/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:19785622/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:23291044/67‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:32241839/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:9461354/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:33665950/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:34066573/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:3576079/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:6316318/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:7601995/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:10698350/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:28711670/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:10762819/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:13198927/1‑68 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:14116665/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:15341000/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:17678172/68‑1 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:6532809/1‑67 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:20611064/1‑67 GAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTtca > 1:33812570/1‑64 CGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTTCTGTACATCCGGCCC > 1:35267762/1‑68 GCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGGTGTGGTGTTCATGCGGCCCg > 1:12516660/1‑67 ATCTCTATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTGGTTAATAGAGATTGG > 1:21350156/1‑68 CTCTATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGAGTGGGC > 1:8885293/1‑68 CTCTATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGGTAATAGAGATTGGGC > 1:25292461/1‑68 AAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAG > 1:1620967/1‑68 AGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGC > 1:18377888/1‑68 GGGCCGGATGTGCTGTACTTCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:2025522/68‑1 GGGCCGGATGTGCTGTACATCCGGCCGTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:34553253/68‑1 CCGGATGTGCTGTACATCCGGGCGTTTTTTCGTGAATAGAGATTGGGCACTTGGCCGTTGAGGGGTTT > 1:26392753/1‑68 CCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTT < 1:22721964/67‑1 CCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTT < 1:14488735/67‑1 CGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTT < 1:33192577/67‑1 ATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTC < 1:14582028/67‑1 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:31646671/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:20791008/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:36367038/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:4591155/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:22837699/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:23333072/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:248452/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:34712524/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:15241199/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:34800917/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTCAGGCGTTTGTCTC > 1:35120772/1‑68 TGTGCTGTACATCCGGCCCTTTTATCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:22584327/1‑68 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG > 1:5265914/1‑68 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTC > 1:2113211/1‑65 TGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT > 1:12742349/1‑68 TGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT > 1:24013022/1‑68 CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2974023‑2974100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT < CP009273/2974105‑2974039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |