| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3701786 | 83 (0.180) | 9 (0.020) | 7/88 | NT | 12.1% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 592 total aligned reads displayed.
GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCG > CP009273/3701718‑3701853 | gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGC‑‑ATGCAAAAAAGCCTGCTCg > 1:16200444/1‑68 (MQ=11) tcgagtcgaACCTCCCTGCCCCCGGTGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:26750170‑M1/1‑68 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:21371993‑M1/68‑1 (MQ=255) cttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAGCCTGCTc > 1:36638655‑M1/57‑68 (MQ=255) cttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAGCCTGCTc > 1:20556110‑M1/57‑68 (MQ=255) cttcgttcgggacgaaggggtcggaggttcgaatcctctatcaccgaccaaattcgAAAAGCCTGCTc > 1:17575623‑M1/57‑68 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:16513648‑M1/67‑1 (MQ=255) gcagGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGaa > 1:19036929‑M2/5‑68 (MQ=255) GGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTg > 1:10073847‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:10318417‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:34252882‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:38125721‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:4944729‑M2/1‑68 (MQ=255) AGGTTCTCCTCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGCGCAGGCTTTTCGAATTTgg > 1:14216365‑M2/1‑67 (MQ=255) AGGTTCTCATCCTCATGAGCTGCAGATGCATAAAAGGCTGCTCGTTGAGCAGTCTTTTCTAATTTGGt < 1:861049‑M2/68‑1 (MQ=255) AGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:23502635‑M2/1‑67 (MQ=255) AGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg < 1:9501172‑M2/67‑1 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:4219232‑M2/1‑68 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:23675964‑M2/1‑68 (MQ=255) GTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCg > 1:14956673‑M2/1‑68 (MQ=255) TCTCATCCTCATGAGCTGCAGCTTCAATAAACCCTGCTAGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:17248366‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:23161065‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:22529475‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:11591913‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:21806445‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:37553219‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:24537815‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:20117986‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:37877347‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:9147886‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:13114799‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:389507‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:18343253‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:33602251‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:2629861‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:32160284‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:31307013‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:5507994‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:35512660‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:11886332‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:13807861‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:15863627‑M2/68‑1 (MQ=255) tGAGCTGCAGATGCAAAAAAGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatga > 1:24050694‑M1/1‑28 (MQ=255) tGAGCTGCAGATGCAAAAAAGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatga > 1:28572455‑M1/1‑28 (MQ=255) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:34961456/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:12398254/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:16666157/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCGCGTGGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:6970007/67‑1 (MQ=255) cTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTc > 1:5333368/1‑68 (MQ=37) tGCAGATGCAAAAAAGCCTGCTCaacgcgcaggcttttttgcatctgcagctcatgaggatgagaa > 1:25020304‑M1/1‑23 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc > 1:3070624/1‑67 (MQ=255) aGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGcc > 1:28330003/1‑67 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt < 1:9682462/67‑1 (MQ=255) tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACt > 1:15502994/1‑67 (MQ=255) gCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTc < 1:16926712/68‑1 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTgg > 1:22747947‑M1/1‑68 (MQ=255) AAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTgg > 1:24163010‑M1/1‑68 (MQ=255) aaaGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg < 1:29183511‑M1/68‑58 (MQ=255) aaaGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg < 1:6086718‑M1/68‑58 (MQ=255) aaaGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg > 1:38801548‑M1/1‑11 (MQ=255) aaaGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg > 1:31613943‑M1/1‑11 (MQ=255) aaaGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcag < 1:10669899‑M1/67‑57 (MQ=255) aaaGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcag < 1:31956053‑M1/67‑57 (MQ=255) AAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTg < 1:28957179‑M1/66‑1 (MQ=255) AAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGc < 1:32865873‑M1/67‑1 (MQ=255) aGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcaggga > 1:18792694‑M1/1‑9 (MQ=255) aGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcaggga < 1:6395751‑M1/68‑60 (MQ=255) AGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:11173368‑M1/68‑1 (MQ=255) AGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:22178698‑M1/68‑1 (MQ=255) gCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctacgggggcagggag > 1:30376027‑M1/1‑8 (MQ=255) gCCTGCGCaccgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggag < 1:31000921‑M1/68‑61 (MQ=255) GCCTGCTCGTTGAGCTGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:36136279‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCCCTTCGTGGCTc < 1:25715878‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:4446700‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:19733651‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:27171089‑M1/67‑1 (MQ=255) ccTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg > 1:14529069‑M1/1‑7 (MQ=255) ccTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg > 1:18001115‑M1/1‑7 (MQ=255) CCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCg < 1:34023907‑M1/67‑1 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggt < 1:7991826‑M1/68‑63 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggt < 1:33449457‑M1/68‑63 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg < 1:36916958‑M1/67‑62 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg < 1:27731589‑M1/67‑62 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggag < 1:27527335‑M1/66‑61 (MQ=255) cTGCGCatcgagctggcttttttgcatgtgcagctcatgaggatgagaacctccgggggcagggaggt < 1:3255245‑M1/68‑63 (MQ=255) cTGCGCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg < 1:28005534‑M1/67‑62 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGcc > 1:7640990‑M1/1‑68 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc > 1:20932811‑M1/1‑67 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc > 1:6665086‑M1/1‑67 (MQ=255) CTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGc > 1:12637094‑M1/1‑67 (MQ=255) tGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggat < 1:34522695‑M1/68‑64 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagtgagtttcg > 1:37328755‑M1/1‑2 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg > 1:29714675‑M1/1‑2 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg > 1:15100077‑M1/1‑2 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg > 1:29435779‑M1/1‑2 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg > 1:1463776‑M1/1‑2 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg > 1:24746882‑M1/1‑2 (MQ=255) TCGTGGACCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGccc > 1:715368‑M1/1‑65 (MQ=255) caacgagctggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcgac < 1:8801274‑M1/68‑68 (MQ=255) CGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGACACTTCGTGGCTCGCCCTGCg < 1:19177854‑M1/68‑1 (MQ=255) | GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCG > CP009273/3701718‑3701853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |