| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3767664 | NA (NA) | 7 (0.020) | 7/98 | NT | NA | noncoding (69/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3767694 | NA (NA) | noncoding (99/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 669 total aligned reads displayed.
CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGG > CP009273/3767598‑3767731 | cTGATGCGGTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg < 1:12323318/67‑1 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg < 1:12989945/67‑1 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg < 1:15481230/67‑1 (MQ=255)cTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAg > 1:24316863/1‑67 (MQ=255) tGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgc < 1:8605088‑M1/68‑3 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgg < 1:27541348‑M1/68‑6 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgg < 1:2603391‑M1/68‑6 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccg < 1:9111456‑M1/67‑5 (MQ=255) tGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccg < 1:4901785‑M1/67‑5 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgga > 1:35406462‑M1/1‑62 (MQ=255) gcgcTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccgga < 1:31976798‑M1/68‑7 (MQ=255) aCGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAgg < 1:37592656/68‑1 (MQ=255) aCGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAgg < 1:27149563/68‑1 (MQ=255) aCGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAgg < 1:1591865/68‑1 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgcg < 1:9663912/68‑1 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgcg < 1:11422625/68‑1 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:4040786/1‑67 (MQ=255) gCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:32451498/1‑67 (MQ=255) cTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:10003323/1‑66 (MQ=255) cTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGgc > 1:21846988/1‑66 (MQ=255) ttATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGACAAGgcgc < 1:2947922/67‑1 (MQ=255) tATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCtt < 1:20916648/68‑1 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:29237183/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:37308225/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:34988407/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:28174637/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:22774884/1‑68 (MQ=255) tCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAc > 1:19636786/1‑68 (MQ=255) cAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGgccggatgcggcgtaagcg < 1:6743266‑M1/68‑20 (MQ=255) cAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcg < 1:28849793/68‑1 (MQ=255) ggCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgcc > 1:34083360/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:13509061/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:16724384/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:3350957/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:14020530/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTAcgccgc > 1:22091856/1‑68 (MQ=255) ccTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGCCCGGATAAGGCGCTTAcgccgc > 1:23778537/1‑68 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGTCGCATCCG < 1:31317024‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATacg < 1:17640381‑M2/68‑4 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:18010485‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:20283718‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:1083486‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:30916786‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:35681472‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:11880899‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:5211451‑M2/68‑1 (MQ=255) aGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCG < 1:26459608‑M2/68‑1 (MQ=255) aTGCATCACAATTTGTTGATTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:3268954‑M2/1‑67 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC > 1:3907519‑M2/1‑67 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:5944682‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:6585609‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:28405016‑M2/67‑1 (MQ=255) aTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:8368551‑M2/67‑1 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCt < 1:30218879/68‑1 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:26695208‑M2/65‑1 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:22560939‑M2/65‑1 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:20780966‑M2/65‑1 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:7891238‑M2/65‑1 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:16608607‑M2/65‑1 (MQ=255) gCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGC < 1:28585273‑M2/65‑1 (MQ=255) aTCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGc < 1:22417623/68‑1 (MQ=255) tCACATTTTGTTGAATTTGCAGGTTCTTGTAGGCCGGAAAAGGCGCTTACGCCGCATCCGGCGCTGcc < 1:33069097/68‑1 (MQ=18) caATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCct < 1:37433986/68‑1 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc > 1:7618400/1‑66 (MQ=255) aaTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc < 1:7023569/68‑1 (MQ=255) aTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc > 1:19027111/1‑67 (MQ=255) aTTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc > 1:31566423/1‑67 (MQ=255) tttGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:23234502/68‑1 (MQ=255) tttGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc < 1:38620315/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:25741510/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:10427929/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:24919860/68‑1 (MQ=255) tgttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcct < 1:12726227/68‑1 (MQ=255) ttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcctc > 1:25342947/1‑67 (MQ=255) ttgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTctcctc > 1:17784222/1‑67 (MQ=255) tgAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCa < 1:27730603/67‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:36428636/68‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:14546966/68‑1 (MQ=255) aTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGga < 1:14958347/68‑1 (MQ=255) gCACGTTCTTGTAGGCGGGATAAGGCGCTTACGCCGCAGCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:36241227/68‑1 (MQ=38) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:36864647/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:38325461/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:4558487/68‑1 (MQ=255) gCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAgg < 1:5446934/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGTTAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:17365215/68‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAggg < 1:33743164/67‑1 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt > 1:37983535/1‑68 (MQ=255) aCGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGt < 1:1830296/68‑1 (MQ=255) cGATCTCGTCGGCCGTATAAGGCGCTTACGCCGCATCCGGCctacaagaacgtgcaaattcaacaaat > 1:26174180‑M2/1‑41 (MQ=255) tCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCGGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTgg < 1:16203082/68‑1 (MQ=255) cTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTggg < 1:23492579/68‑1 (MQ=255) aGgccggatgcggcgtaagcgccttatccggcctacaagaacgtgcaaattcaacaaattgtgatgca > 1:2142236‑M1/1‑2 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:18541071/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:1991011/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:34852827/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:7322344/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:24600384/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:24033644/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg > 1:21153728/1‑68 (MQ=255) aGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTAGGGTGAgg > 1:16907155/1‑68 (MQ=255) | CTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGG > CP009273/3767598‑3767731 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |