| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3870904 = | NA (NA) | 3 (0.010) | 3/84 | NT | NA | intergenic (‑79/+161) | yidB/gyrB | DUF937 family protein/DNA gyrase, subunit B |
| ? | CP009273 | 3870933 = | NA (NA) | intergenic (‑108/+132) | yidB/gyrB | DUF937 family protein/DNA gyrase, subunit B | |||||
Only 100 of 779 total aligned reads displayed.
GTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTA > CP009273/3870837‑3870969 | tgaattttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagaaaa < 1:19644879‑M1/4‑1 (MQ=255) aGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAg > 1:30805889/1‑68 (MQ=255) aGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAg > 1:190922/1‑68 (MQ=255) aGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAg > 1:39127487/1‑68 (MQ=255) aGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAg > 1:35604845/1‑68 (MQ=255) aGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAg > 1:14060904/1‑68 (MQ=255) aGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAg > 1:26062900/1‑68 (MQ=255) aGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAg > 1:26679187/1‑68 (MQ=255) aGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAg > 1:31445672/1‑68 (MQ=255) aGCGTTACGTGTTGACCCAAAAAGTATAGATTTCCGGGATGATAATAGCGGATTGCAGAAATAAAAAg > 1:23463221/1‑68 (MQ=255) cGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAgg > 1:17097027/1‑67 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAggg > 1:28462356‑M1/62‑68 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:1855359‑M1/6‑1 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:27597541‑M1/6‑1 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg > 1:21614889‑M1/62‑67 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:298705‑M1/6‑1 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg > 1:31787159‑M1/62‑67 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:15542790‑M1/6‑1 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:4858109‑M1/6‑1 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:5798581‑M1/6‑1 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:14630028‑M1/6‑1 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:32202730‑M1/6‑1 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:13756866‑M1/6‑1 (MQ=255) attttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAgg < 1:23849638‑M1/6‑1 (MQ=255) ttttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGc > 1:20358021‑M1/61‑68 (MQ=255) gTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGc > 1:27280275/1‑68 (MQ=255) gTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGc > 1:33109852/1‑68 (MQ=255) gTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGc > 1:4574587/1‑68 (MQ=255) gTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGc > 1:22278890/1‑68 (MQ=255) gTTACGTGTTGACCAAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGc > 1:6565238/1‑68 (MQ=255) tttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCg < 1:33766057‑M1/9‑1 (MQ=255) tcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGga > 1:18301066‑M1/58‑68 (MQ=255) tcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGga > 1:10694978‑M1/58‑68 (MQ=255) catgattttgtaggccggataaggcgttcacgccgcatccggcaagaatctataagAAAAGGGCGgag > 1:31145253‑M1/57‑68 (MQ=255) cGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGgag > 1:35244138/1‑68 (MQ=255) gtgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGgaga > 1:38472383/1‑68 (MQ=255) gtgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGgaga > 1:28204174/1‑68 (MQ=255) gtgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGgaga > 1:20708074/1‑68 (MQ=255) gtgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGgaga > 1:24540149/1‑68 (MQ=255) gtgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGgaga < 1:7135709/68‑1 (MQ=255) ctgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGgaga > 1:9088651‑M1/56‑68 (MQ=255) atgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGgaga > 1:11473377‑M1/56‑68 (MQ=255) tgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTTCGGATTGAAGAAATAAAAAGGGCGTAgat > 1:37061580/1‑68 (MQ=255) tgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAgat > 1:20970840/1‑68 (MQ=255) tgattttgtaggccggataaggcgttcacgccgcatccggcaagaagctataagAAAAGGGCGgaga < 1:18010125‑M1/13‑1 (MQ=255) gtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAgatg > 1:21333451/1‑68 (MQ=255) tGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAgatgat < 1:34418370/68‑1 (MQ=255) tGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAgatgat < 1:12526634/68‑1 (MQ=255) tGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAgatgat < 1:3283343/68‑1 (MQ=255) tGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAgatgat < 1:8611125/68‑1 (MQ=255) gACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGAtc < 1:35880345/68‑1 (MQ=255) aCCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGAtc < 1:8279586/67‑1 (MQ=255) cccAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGAtct > 1:11119747/1‑67 (MQ=255) cccAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGAtct > 1:37434163/1‑67 (MQ=255) cccAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGAtct > 1:2209914/1‑67 (MQ=255) aaaaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGTCGGAGATGATCTCCGc < 1:22800187/68‑1 (MQ=255) aaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGc > 1:10034515/1‑66 (MQ=255) aaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCt < 1:27862991/68‑1 (MQ=255) aGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCtt < 1:6904881/68‑1 (MQ=255) ataGATTTTCGGGATGATAATTGCGGATTGCAGAAAAAAAAAGGGCGGAGATGATCTCCGCCCTTTTc < 1:37721922/68‑1 (MQ=255) ataGATTTGCTGTATGATAATTGCGGATTGCATAAATAAAAAGGGCGGAGATGATCTCCGCCCttt < 1:10349731/66‑1 (MQ=37) ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCtttt < 1:19989022/67‑1 (MQ=255) ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCtttt < 1:6296651/67‑1 (MQ=255) gATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTta > 1:1176565/1‑68 (MQ=255) aTTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtat > 1:14340488/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:15181964/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:13108113/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:23109517/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:34691859/1‑68 (MQ=255) tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTtata > 1:29183439/1‑68 (MQ=255) aatGCGGGATGATAATTGCGGATTGCAGAAAAAAAAAGGGCGGAGATGATCTCCGCCCTTTTCAtata > 1:26294263/3‑68 (MQ=37) tGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGc < 1:24867210/68‑1 (MQ=255) tGCGGCATGATAATTGCGGCTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGc < 1:18861444/68‑1 (MQ=255) gCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGct < 1:12989923/68‑1 (MQ=255) gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGct > 1:13418087/1‑66 (MQ=255) atgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGcttctt > 1:28702478/1‑67 (MQ=255) atAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCg > 1:11991477/1‑68 (MQ=255) atAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCg > 1:36342109/1‑68 (MQ=255) tAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCg < 1:33513469/67‑1 (MQ=255) atttGCGTATTGCAGTAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGa < 1:32525478/66‑1 (MQ=37) aaTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGa > 1:15857369/1‑68 (MQ=255) aaTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGa < 1:16635748/68‑1 (MQ=255) aTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGAt > 1:14809387/1‑68 (MQ=255) tGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATgc > 1:37884878/1‑68 (MQ=255) gCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATgcg > 1:38238545/1‑68 (MQ=255) gCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATgcg > 1:25312318/1‑68 (MQ=255) ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTACAGCTTCTTGCCGGATgcggc > 1:30360149/1‑68 (MQ=255) aTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGt > 1:30580515/1‑68 (MQ=255) ttGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGt < 1:9666396/67‑1 (MQ=255) ttGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTg < 1:21886087/68‑1 (MQ=255) ttGCAGAAATAAAAAGGCCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATTCGGCGTg < 1:32022789/68‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:4254196/65‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:16056471/65‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:7982800/65‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACg < 1:29517016/65‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGc < 1:5211073/66‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGc < 1:17417729/66‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGc < 1:7635367/66‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGc < 1:25676175/66‑1 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCt > 1:36625792/1‑68 (MQ=255) | GTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTA > CP009273/3870837‑3870969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |