| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3920789 | 273 (0.580) | 20 (0.050) | 9/88 | NT | 7.3% | coding (275/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | = 3920804 | 296 (0.800) | coding (290/993 nt) | asnA | asparagine synthetase A | |||||
Only 100 of 774 total aligned reads displayed.
TTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTT > CP009273/3920723‑3920856 | ttcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCT < 1:38539228‑M1/67‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:35032198/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:33205870/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:29862140/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:21851327/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:17719032/68‑1 (MQ=255) cattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTa < 1:9641970/68‑1 (MQ=255) cattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTa < 1:26149955/68‑1 (MQ=255) cccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTacac < 1:6769324‑M1/18‑1 (MQ=255) cTGGCGAAGTGGAAACGGCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGca < 1:1269354/68‑1 (MQ=255) ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca > 1:27325365/1‑68 (MQ=255) ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca < 1:20921708/68‑1 (MQ=255) ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCCCGGGCGAAGGGCTGTACACGcaca < 1:8497693/68‑1 (MQ=255) gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATg < 1:10275263/67‑1 (MQ=255) gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATg < 1:10672472/67‑1 (MQ=255) acatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGaaa < 1:37129546‑M1/28‑1 (MQ=255) ggAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcc > 1:37834953‑M2/1‑64 (MQ=255) aaaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccc > 1:9152916‑M2/1‑62 (MQ=255) aaaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccc > 1:36679431‑M2/1‑62 (MQ=255) aaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagccct < 1:36887231‑M2/67‑7 (MQ=255) ccgagtgcaacggcgaaagacggtcttcatcgGGGCGAAGGGCGGTACACGCCCCTGAACGCCCTTc < 1:21197414‑M1/35‑1 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACCCGCACATGAAAGCcctgc < 1:26961303‑M1/35‑3 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc < 1:1383421‑M1/35‑1 (MQ=255) cGTCAGACCTTAGGGCAAAACGACTTAAGAGCGGGCGAAGGGCTGTACACGCACATGAAagacctta < 1:19427908‑M2/67‑9 (MQ=255) gTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttcgc > 1:5773988‑M2/1‑58 (MQ=255) cAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttcgcc > 1:3962211‑M2/1‑56 (MQ=255) cAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAagcccttcgcc > 1:6918877‑M2/1‑56 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTttcatgtgcgtgtacagcccttcgccccga < 1:35612995‑M1/67‑31 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa < 1:28808474/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa < 1:11915261/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa < 1:8872030/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa < 1:15900616/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa < 1:23731885/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt > 1:32439786/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCATCGCCCCGAt > 1:14951638/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCACTTCGCCCCGAt > 1:22915250/1‑68 (MQ=255) ggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGaa < 1:16883325‑M1/46‑1 (MQ=255) gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg > 1:26496567/1‑67 (MQ=255) ggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa > 1:24651036/1‑67 (MQ=255) ggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa > 1:29486060/1‑67 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTttcatgtgcgtgtacagcccttcgccccgatgaagacc > 1:19808667‑M1/1‑30 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa < 1:13075588/66‑1 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCACTTAGCCCCGAGGAAGaac > 1:29064687/1‑66 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACAAGCTCATTAAAGCCCTTCGCCCCGATGAAGAcc > 1:11556813/1‑68 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt < 1:15415035/68‑1 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt < 1:1656511/68‑1 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt < 1:32147996/68‑1 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt < 1:22156708/68‑1 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc < 1:7795396/68‑1 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc < 1:13687614/68‑1 (MQ=255) acGACTTCAGCGCGGGCGAAGGGCTttcatgtgcgtgtacagcccgtcgcccgcgctgaagtcgtgtt > 1:37677538‑M1/1‑25 (MQ=255) aCTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTtc > 1:24269464/1‑67 (MQ=255) ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTcc < 1:33838478/68‑1 (MQ=255) tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg > 1:19216592/1‑68 (MQ=255) tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCGTCGCCCCGATGAAGACCGGCTTTCTCCg > 1:6552901/1‑68 (MQ=255) cAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGt < 1:4201460/68‑1 (MQ=255) aGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGtt > 1:4348064/1‑68 (MQ=255) aGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCGTTCTCCgat > 1:7211724/1‑66 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc > 1:33040129/1‑68 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc > 1:4857393/1‑68 (MQ=255) gGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc < 1:37479549‑M1/65‑1 (MQ=255) gGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc < 1:31767374‑M1/65‑1 (MQ=255) gGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc < 1:28427476‑M1/65‑1 (MQ=255) GGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTc < 1:11183846‑M1/68‑1 (MQ=255) GGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTc < 1:5416828‑M1/68‑1 (MQ=255) GCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg < 1:6135324‑M1/68‑1 (MQ=255) CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAATACCGTCTTTCTCCGTTGCACTCg > 1:33253246‑M1/1‑67 (MQ=255) CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc > 1:31067880‑M1/1‑47 (MQ=255) CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg > 1:20293652‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:23194962‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:38115454‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:38780077‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:17254879‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:36448603‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:36067556‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:3474744‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:31589413‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:8146863‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:14161037‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:25039067‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:24022316‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:22667788‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt > 1:1009632‑M1/1‑68 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt > 1:21508980‑M1/1‑68 (MQ=255) AAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:30688857‑M1/66‑1 (MQ=255) aGGGCTGTACACGCACATGAAagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtt > 1:4683088‑M2/1‑21 (MQ=255) AGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc > 1:13559088‑M1/1‑67 (MQ=255) AGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGGCTTTCTCCGTTGCACTCGGTCt > 1:27800362‑M1/1‑68 (MQ=255) ggCTttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtttcc > 1:25809912‑M1/1‑4 (MQ=255) ggCTttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtttcc > 1:204409‑M1/1‑4 (MQ=255) ggCTttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtttcc > 1:1472679‑M1/1‑4 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTGTTTCTCCGTTGCACTCGGTCTAt < 1:35783079‑M1/68‑1 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:1620329‑M1/68‑1 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:12223983‑M1/68‑1 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:30215774‑M1/68‑1 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTa > 1:27506758‑M1/1‑66 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:15178227‑M1/1‑67 (MQ=255) cTttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtttcca < 1:18281097‑M1/67‑66 (MQ=255) cTttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtttcca < 1:34197387‑M1/67‑66 (MQ=255) tttcatgtgcgtgtacagcccttcgcccgcgctgaagtcgtgttgccctaaggtctgacgtttccact > 1:35353800‑M1/1‑1 (MQ=255) | TTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTT > CP009273/3920723‑3920856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |