New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360168 =	NA (NA)	84 (0.210)	13/94	NT	NA	intergenic (‑102/+493)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	360191 =	NA (NA)					intergenic (‑125/+470)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCC  >  CP009273/360101‑360174                                                                    |       cccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTc        >  1:16996252/1‑68 (MQ=255)   tAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa      <  1:1935054‑M1/67‑1 (MQ=255)   tAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa      <  1:22843466‑M1/67‑1 (MQ=255)   tAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa      <  1:23121867‑M1/67‑1 (MQ=255)   tAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaa      <  1:10775601‑M1/67‑1 (MQ=255)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:36756708/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:23454980/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:15012375/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:17182034/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:1434473/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:17467985/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:3968788/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:2673165/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:13894635/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:18534602/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:34785875/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:18934029/68‑1 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:6689222/68‑1 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:9540350/1‑68 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:11318243/68‑1 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:10945821/68‑1 (MQ=37)    aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     <  1:8968464/68‑1 (MQ=37)    aaTTCCGGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:8747676/1‑68 (MQ=255)    aaTTCCGGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:8702952/1‑68 (MQ=255)     aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTaaaa     >  1:34677777/1‑67 (MQ=25)     aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCaaa     >  1:20993754/1‑67 (MQ=35)     aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    <  1:11254794/68‑1 (MQ=35)     aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    <  1:7192546/68‑1 (MQ=35)     aTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTGCGCAACGTTCaaa     >  1:32181466/1‑67 (MQ=25)      ttCCTGGCAGTTTATGGCGTGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:13681325/1‑67 (MQ=255)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCGCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:18446422/1‑67 (MQ=255)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:32044267/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:20094851/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:34277186/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:2465108/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:24984520/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:25590512/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:27297009/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:3662642/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:26531956/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:38963055/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:5148457/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:5791936/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:27139497/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:22208326/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:8892650/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:11713681/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:12623608/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:12785136/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:13047174/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:1392610/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:14090857/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:14201738/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:16905934/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:1437151/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:7786756/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:18379799/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAt    >  1:24187494/1‑67 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATc   <  1:27021540/68‑1 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATc   >  1:7479541/1‑68 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATc   >  1:34045820/1‑68 (MQ=33)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGCAACGTTCAAAt    >  1:37282567/1‑67 (MQ=18)      ttCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCATCGCAAAGTTCaaaa    >  1:38023096/1‑66 (MQ=11)       tCCTGGCAGTTTATGGCGGGCGTCCTGCGCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:33707354/1‑68 (MQ=14)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCTACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:9452469/1‑68 (MQ=14)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:10167936/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:34994692/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:9566392/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:35500673/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:8380421/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:4674461/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:28222851/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:10256987/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:10264333/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:10839244/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:10845220/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:11365243/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:11381558/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:1435767/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:17134306/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:18127989/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:21172905/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:22421726/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:22580297/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:28610503/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:28758497/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:28803995/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:29624572/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:29736000/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:3029733/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:31736905/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:31765507/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:34539570/1‑68 (MQ=31)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGGTCAAATcc  >  1:3467556/1‑68 (MQ=14)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCGCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:31804130/1‑68 (MQ=14)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACACTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:38969723/1‑68 (MQ=14)       tCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACACTCCGGGCCGTTGCTTCGCAACGTTCAAATcc  >  1:34996644/1‑68 (MQ=14)                                                                    |       CCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCC  >  CP009273/360101‑360174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.