| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 777093 | 133 (0.280) | 74 (0.180) +TTTGAGT |
4/98 | NT | 38.9% | noncoding (61/76 nt) | lysQ | tRNA‑Lys |
| ? | CP009273 | = 2514886 | NA (NA) | noncoding (614/1345 nt) | IS186 | repeat region | |||||
Only 100 of 328 total aligned reads displayed.
GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA > CP009273/777028‑777160 | gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:5857854/68‑1 (MQ=39) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:28086900/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:22051277/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:17768772/1‑68 (MQ=35) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:31907047/1‑67 (MQ=33) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:11186563/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:35376182/1‑68 (MQ=31) aTCAATTGGTCGCAGGTTCGGATCtttgagtatcgcagatagtaaaaaagcgcctttaggggggtttt > 1:33144377‑M1/1‑24 (MQ=255) aTCAATTGGTCGCAGGTTCGAATCtttgagtatcgcagatagtaaaaaagcgcctttagggggctttt > 1:38441934‑M1/1‑24 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCTTAAAGGCGCTTTtt > 1:23344529‑M2/1‑66 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAGATGCGATTTtt < 1:18840898‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:37995808‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt > 1:30786906‑M2/1‑66 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:20470885‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:19074811‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:34565505‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:35844685‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:22367130‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:2818413‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:701883‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:8525834‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt < 1:27858721‑M2/68‑3 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTGTtt < 1:30592220‑M2/68‑3 (MQ=255) tCAATTGGGCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTtt > 1:32558875‑M2/1‑66 (MQ=255) aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTttt < 1:22215455‑M2/67‑4 (MQ=255) aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTttt < 1:19624400‑M2/67‑4 (MQ=255) aTTGGTCGCAGGTTCGAATCCTGCACGCCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTttt < 1:11153335‑M2/66‑4 (MQ=255) aTTGGTCGCAGGTTCGAATCCTGCACGCCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTttt < 1:20044931‑M2/66‑4 (MQ=255) aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTttt < 1:24718312‑M2/66‑4 (MQ=255) ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCt > 1:4398319/1‑68 (MQ=35) tGGTCGCAGGTTCGAATCtttgagtatcgctgatagcaaaaagcgcctttagggggcgattttagatt > 1:8768200‑M1/1‑18 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:3095733/1‑68 (MQ=35) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:26811717/1‑68 (MQ=35) gggcGCAGGGTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:21697120/65‑1 (MQ=255) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:3877011/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:38795868/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:5593051/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:8354798/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:9845432/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:21181656/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:24114979/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:23690066/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:13432733/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTAGCTa > 1:20606024/1‑67 (MQ=18) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:32026319/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:11665053/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:41474/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:14069570/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:12616124/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTg < 1:13801636/68‑1 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:17110572/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:27366308/68‑1 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:7829678/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:29647033/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:5302856/68‑1 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:3375240/68‑1 (MQ=35) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtggg > 1:6371070‑M1/1‑11 (MQ=255) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtggg > 1:9080946‑M1/1‑11 (MQ=255) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgg < 1:37538535‑M1/67‑57 (MQ=255) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgg < 1:17959225‑M1/67‑57 (MQ=255) ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:17726749/1‑68 (MQ=35) ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:2912094/1‑68 (MQ=35) gTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:34312767/1‑67 (MQ=35) ttCGAATCtttgagtatcgcaggtagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg > 1:21012185‑M1/1‑8 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggggcttttttacattggtgggt < 1:29598773‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg > 1:7654980‑M1/1‑8 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtc < 1:3504323‑M1/67‑60 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtc < 1:24867414‑M1/67‑60 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:14492717‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:13838541‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:10005722‑M1/66‑59 (MQ=255) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:36964866/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:22642464/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:1634195/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:11928372/66‑1 (MQ=35) tctaatctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:5165334‑M1/65‑62 (MQ=255) tCGAATCtttgcgtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:7480949‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:3294749‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:18082747‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:18515806‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:4583238‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:6576663‑M1/68‑62 (MQ=255) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:25385682/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:12442226/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:25865543/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:33336302/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACt < 1:15218265/68‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACt < 1:38923520/68‑1 (MQ=35) tCGAACCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggcgggtcgt < 1:7169901‑M1/68‑62 (MQ=255) cGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTc < 1:7965385/68‑1 (MQ=35) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:3117376‑M1/1‑3 (MQ=255) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:16561749‑M1/1‑3 (MQ=255) tCtttgtgtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:27147466‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:25175639‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:36284468‑M1/68‑67 (MQ=255) ctttgagtatctcatatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:30810344‑M1/68‑68 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:23052787‑M1/68‑68 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:28579066‑M1/68‑68 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:28848296‑M1/68‑68 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:4108721‑M1/68‑68 (MQ=255) | GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA > CP009273/777028‑777160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |