New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 910549 =112 (0.240)6 (0.010) 6/98 NT 6.3% intergenic (‑236/+259) ybjE/aqpZ putative transporter/aquaporin Z
?CP009273 910582 = 79 (0.190)intergenic (‑269/+226) ybjE/aqpZ putative transporter/aquaporin Z

Only 100 of 365 total aligned reads displayed.

TGGTGGCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACC  >  CP009273/910484‑910616
                                                                 |                                                                   
tggtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAgg                                                                    <  1:29589444/67‑1 (MQ=35)
  gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAgggg                                                                  >  1:7377160/1‑66 (MQ=25)
  gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcg                                                                 >  1:13655542/1‑68 (MQ=35)
  gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc                                                                  >  1:32917599/1‑67 (MQ=35)
  gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc                                                                  >  1:20023436/1‑67 (MQ=35)
  gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc                                                                  >  1:1304796/1‑67 (MQ=35)
  gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc                                                                  >  1:15872600/1‑67 (MQ=35)
  gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc                                                                  <  1:25397‑M1/4‑1 (MQ=255)
  gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc                                                                  <  1:27534081‑M1/4‑1 (MQ=255)
  gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc                                                                  <  1:24388154‑M1/4‑1 (MQ=255)
  gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc                                                                  <  1:2942259‑M1/4‑1 (MQ=255)
  gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc                                                                  <  1:21732331‑M1/4‑1 (MQ=255)
  gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccgtacggctaccgggtcGGgc                                                                  <  1:8511248‑M1/4‑1 (MQ=255)
   tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAggggc                                                                 >  1:480949/1‑65 (MQ=25)
   tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc                                                                >  1:33129138/1‑68 (MQ=35)
   tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc                                                                >  1:4160686/1‑68 (MQ=35)
   tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc                                                                >  1:22481881/1‑68 (MQ=35)
   tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc                                                                >  1:24708696/1‑68 (MQ=35)
   tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc                                                                >  1:1026455/1‑68 (MQ=35)
   gggtcgggcgcgaggtaacatccctgtaaaacgcgccctcagcccacatccATGTGGGCTGAGGgcgc                                                                <  1:27363308‑M2/17‑1 (MQ=255)
   ctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgcg                                                                 >  1:31153221‑M1/63‑67 (MQ=255)
    tctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGGcgcg                                                               <  1:14288039‑M1/7‑1 (MQ=255)
    tctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGGcgcg                                                               <  1:20148260‑M1/7‑1 (MQ=255)
     gCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGt                                                              >  1:1476147/1‑68 (MQ=35)
      cGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGt                                                              <  1:16906695/67‑1 (MQ=35)
      cGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGt                                                              <  1:18999472/67‑1 (MQ=35)
       gTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGttt                                                            <  1:34918169/68‑1 (MQ=35)
       gTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtt                                                             <  1:35641452/67‑1 (MQ=35)
       gTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtt                                                             <  1:8917013/67‑1 (MQ=35)
       gTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtt                                                             <  1:5932729/67‑1 (MQ=35)
       gTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtt                                                             <  1:18326417/67‑1 (MQ=35)
         cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt                                                           <  1:37503873/67‑1 (MQ=35)
         cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt                                                           <  1:16687923/67‑1 (MQ=35)
         cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt                                                           <  1:12708550/67‑1 (MQ=35)
         cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt                                                           <  1:23708182/67‑1 (MQ=35)
         cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt                                                           <  1:24014011/67‑1 (MQ=35)
         cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt                                                           <  1:7627671/67‑1 (MQ=35)
         cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt                                                           <  1:11940351/67‑1 (MQ=35)
         cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt                                                           <  1:11567315/67‑1 (MQ=35)
         cAAAATCGCCGAGGCGTCCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt                                                           <  1:3706400/67‑1 (MQ=25)
          aaaaTCGCCGAGGCGTTCCCTGACGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTAc                                                         <  1:29378451/68‑1 (MQ=25)
          aaaaTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTAc                                                         <  1:30314603/68‑1 (MQ=35)
          aaaaTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTAc                                                         <  1:10400352/68‑1 (MQ=35)
             aTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGTTGTGGGCTGAGGGCGCGTTTTACAgg                                                      <  1:7133869/68‑1 (MQ=25)
             aTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAgg                                                      >  1:38069903/1‑68 (MQ=35)
              tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg                                                     <  1:3670489/68‑1 (MQ=33)
              tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg                                                     <  1:38901260/68‑1 (MQ=33)
              tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg                                                     <  1:15371852/68‑1 (MQ=33)
              tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg                                                     <  1:22072711/68‑1 (MQ=33)
              tCGCCGAGGCGGTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg                                                     <  1:37806633/68‑1 (MQ=18)
               cGCCGAGGCGTTCGCTTATGGCCGGGGCAGCCCACATGGATGTTGGCTGAGGGCGCGTTTTACAggta                                                    <  1:3768921/68‑3 (MQ=11)
               cGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGa                                                    <  1:26090963/68‑1 (MQ=31)
               cGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGa                                                    <  1:1657331/68‑1 (MQ=31)
               cGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGa                                                    <  1:30784691/68‑1 (MQ=31)
                  taacatccctgtaaaacgcgccctcagcccacatccATGTGGGCTGAGGGCGCGTTTTACAGGGAt                                                   <  1:2848783‑M2/30‑1 (MQ=255)
                                                      ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGa                 <  1:32835236‑M2/64‑1 (MQ=255)
                                                      ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATaa              <  1:325575‑M2/67‑1 (MQ=255)
                                                      ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATaa              >  1:8062591‑M2/1‑67 (MQ=255)
                                                      ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:2700877‑M2/1‑68 (MQ=255)
                                                      ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:5694913‑M2/1‑68 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAg                    >  1:37956479‑M2/1‑60 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:4195030‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:31590479‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:32103743‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:35836531‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:557066‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:29770464‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:6191295‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             <  1:18828271‑M2/67‑1 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:17649999‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:34120840‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             >  1:34477013‑M2/1‑67 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg             <  1:12376652‑M2/67‑1 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt            <  1:525813‑M2/68‑1 (MQ=255)
                                                       TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt            <  1:32396729‑M2/68‑1 (MQ=255)
                                                        GTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTc           >  1:33298545‑M2/1‑68 (MQ=255)
                                                          GGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCg          <  1:30565669‑M2/67‑1 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGCCCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:10715637‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:17395142‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:3551135‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:11299787‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:33443247‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:19663520‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:31968698‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:16146238‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:20816362‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:13448131‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:30161931‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:22808167‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:23292457‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:13888285‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:28013053‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:25311410‑M2/1‑68 (MQ=255)
                                                            GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCAGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:26356875‑M2/1‑68 (MQ=255)
                                                             CTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg       >  1:8320820‑M2/1‑67 (MQ=255)
                                                              TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc     >  1:25789524‑M2/1‑68 (MQ=255)
                                                              TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc     >  1:26755174‑M2/1‑68 (MQ=255)
                                                              TGAGGGCGCGGTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc     <  1:18510818‑M2/68‑1 (MQ=255)
                                                                 GGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCAcc  <  1:21538104‑M1/68‑1 (MQ=255)
                                                                 GGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCAcc  <  1:36404648‑M1/68‑1 (MQ=255)
                                                                 |                                                                   
TGGTGGCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACC  >  CP009273/910484‑910616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.