| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 12 (0.030) | 5/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 768 total aligned reads displayed.
CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGC > CP009273/1111013‑1111146 | cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTaa > 1:31159374/1‑68 (MQ=255)cgcCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTaa > 1:32873364/1‑68 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:18933950‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:37221537‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:28325450‑M1/2‑1 (MQ=255) atatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccAt < 1:30521321‑M1/2‑1 (MQ=255) tatgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATg > 1:34931664‑M1/66‑68 (MQ=255) cccGACTCCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAAt > 1:17777755/1‑67 (MQ=255) ccGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGc < 1:20474229/68‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATg < 1:8159707‑M1/3‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATg < 1:29371125‑M1/3‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATg < 1:35157381‑M1/3‑1 (MQ=255) atgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGc > 1:20841159‑M1/65‑68 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc < 1:13385298‑M1/5‑1 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc < 1:28054103‑M1/5‑1 (MQ=255) tgtggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGcc < 1:22775205‑M1/5‑1 (MQ=255) tggttaccccgtcgctttaaaacacgcccggaaggcgtaccttcacgctattaaatctcccATGCCgg < 1:27141449‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:29863542‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:3539075‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:35714904‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:26518599‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:22500845‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:21672157‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:21203222‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:37779848‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:5497006‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:10416704‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:16000599‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:12906877‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:11709559‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:14695546‑M1/7‑1 (MQ=255) tggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg < 1:10024558‑M1/7‑1 (MQ=255) ggttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCgg > 1:28984449‑M1/61‑67 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt > 1:19374325/1‑68 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:37482330/68‑1 (MQ=255) ttCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt < 1:3143845/68‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:751479‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:14493812‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:17161425‑M1/9‑1 (MQ=255) gttacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGAt < 1:28756093‑M1/9‑1 (MQ=255) tCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGAt > 1:6644857/1‑67 (MQ=255) tacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGATGc > 1:30858806‑M1/58‑68 (MQ=255) tacaccgtcgctttaaaacacgcccggaaggcgttccttcacgctattaaatctcccATGCCGGATGc > 1:8816901‑M1/58‑68 (MQ=255) cAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGcc < 1:8472816/68‑1 (MQ=255) gggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:2780690/1‑68 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAtt > 1:25927285/1‑68 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:15663824/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:18068618/1‑67 (MQ=255) ggggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt > 1:5030515/1‑67 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:1193613/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:13611011/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:14224221/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:38298058/66‑1 (MQ=255) gggCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCAt < 1:27482196/66‑1 (MQ=255) gcAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGa < 1:32252233/67‑1 (MQ=255) gcAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGa < 1:23110102/67‑1 (MQ=255) tCCAGAGATCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCAt < 1:9332640/68‑1 (MQ=255) tCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCAt < 1:24533603/68‑1 (MQ=255) tCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCAt < 1:36841274/68‑1 (MQ=255) agagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc > 1:32025865/1‑68 (MQ=255) agagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc > 1:17354007/1‑68 (MQ=255) gagCTTTTATCGCTAAATCCGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCgg < 1:38590412/66‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCgg < 1:30045017/66‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCgg < 1:33570165/66‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:23819664/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGc < 1:6207720/67‑1 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:1529974/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:36621870/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCa > 1:5863245/1‑68 (MQ=255) gagCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATACGGCa > 1:12198955/1‑68 (MQ=255) gCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATg > 1:19722240/1‑68 (MQ=255) ttttAACGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATggg < 1:18364050/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:13915515/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:11426752/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:26300996/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:4899708/68‑1 (MQ=255) tATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgaga > 1:1630165/1‑68 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:22015275/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:23347253/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:24711640/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:2511032/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:10623765/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:7948484/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:16700433/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:8995596/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:34308655/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:36223374/68‑1 (MQ=255) cTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGGATCCGGCATGGGAGATTTaa > 1:15044384/1‑68 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:4313978/68‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc > 1:29768665/1‑68 (MQ=255) cacgctattaaatctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGa < 1:9701474‑M1/50‑1 (MQ=255) ggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg > 1:7031663/1‑68 (MQ=255) tGCTGTCGTAATGCCGGATGCAATTCTGAAGAATCCGGCATGGGAGATTTAATAGAGTGAAGTAACg > 1:6401694/1‑67 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:2559543/68‑1 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:20165200/68‑1 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:33936214/68‑1 (MQ=255) cTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt > 1:11120708/1‑68 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCtt < 1:39036372/68‑1 (MQ=255) atctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt < 1:379776‑M1/60‑1 (MQ=255) tAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCgg > 1:4062225/1‑67 (MQ=255) | CGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGC > CP009273/1111013‑1111146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |