New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129223 (0.470)17 (0.040) 9/94 NT 7.8% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 217 (0.550)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 517 total aligned reads displayed.

CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT  >  CP009273/1823063‑1823196
                                                                  |                                                                   
  gTTGCCCGGCGTTAATCGCTGGCTGACGGCACCCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                                    >  1:23112316/1‑66 (MQ=255)
  gTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                                    >  1:34997929/1‑66 (MQ=255)
  cgcggctgtccatctgaccattcagtcggcgtttgtcacagccggtcaacgctgcaCCTGCGcccc                                                                    <  1:2224651‑M1/10‑1 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                                >  1:37687269/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                                >  1:31791175/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                                >  1:6427997/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt                                                                 <  1:22380067/67‑1 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt                                                                 <  1:11048811/67‑1 (MQ=255)
     gCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCttt                                                               >  1:22007356/1‑68 (MQ=255)
       ccGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTc                                                             >  1:4493844/1‑68 (MQ=255)
         ggCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCa                                                            >  1:31149870/1‑67 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:34483836/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:6255193/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:26495006/67‑1 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                        <  1:23901392/68‑1 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                   >  1:21578649/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                   >  1:31030683/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCAGGGCCCgccggttattggtgaaaa                                                   >  1:28397169‑M1/1‑50 (MQ=255)
                   gctggctgACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcg                                                  >  1:2686127/1‑67 (MQ=255)
                      ggCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg                                              >  1:11274241‑M2/1‑66 (MQ=255)
                       gCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg                                              >  1:18949035‑M2/1‑65 (MQ=255)
                        cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                            <  1:6675764‑M2/68‑5 (MQ=255)
                        cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                             >  1:17591027‑M2/1‑64 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                            >  1:37183375‑M2/1‑63 (MQ=255)
                            cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                         >  1:18623308‑M2/1‑60 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                       <  1:477332‑M2/68‑10 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATGAACGGCGGGCGCAGGt                                      <  1:35303895/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                      <  1:31317022/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                      <  1:4001647/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                      <  1:14545356/67‑1 (MQ=255)
                                aaCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggc                                     >  1:32986662‑M2/1‑56 (MQ=255)
                                 aCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGcc                                   >  1:16924928/1‑67 (MQ=255)
                                 aCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCa                                   >  1:15255470/1‑68 (MQ=255)
                                  ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAg                                  <  1:33351765/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatg                                 >  1:20486763‑M1/1‑32 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:6958367/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:30335782/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:121001/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:34876925/68‑1 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCgccgtttattgctgtaaagcggggcgcagggcgatgcgtt                             >  1:5618226‑M1/1‑28 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcg                               >  1:37919232‑M2/1‑49 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                               <  1:4311334/66‑1 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                             >  1:12834251/1‑68 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCACCAATAACCGGCgggcgcagggcgatgcgtt                             >  1:19433599‑M2/1‑49 (MQ=255)
                                        gAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGa                            <  1:5033186/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                        <  1:25991142/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                        <  1:34134139/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                         >  1:20234503/1‑67 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:17434747/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:38562349/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:13420517/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:36215602/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:32051505/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:23398921/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:7731926/68‑1 (MQ=255)
                                                aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                    <  1:32644933/68‑1 (MQ=255)
                                                 aCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg                   >  1:2894825/1‑68 (MQ=255)
                                                  ggCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                  <  1:3557433/67‑1 (MQ=255)
                                                  cGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcg                    >  1:8440935‑M1/1‑17 (MQ=255)
                                                  cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                  <  1:5373269/68‑1 (MQ=255)
                                                     aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa               >  1:21186186/1‑68 (MQ=255)
                                                     aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa               >  1:19830188/1‑68 (MQ=255)
                                                       cGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc             <  1:9371779/68‑1 (MQ=255)
                                                       cGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc             <  1:13678642/68‑1 (MQ=255)
                                                         aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg            <  1:29636427‑M1/66‑1 (MQ=255)
                                                         aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg            <  1:8259556‑M1/66‑1 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          >  1:7142352‑M1/1‑9 (MQ=255)
                                                          CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc          <  1:11606010‑M1/68‑1 (MQ=255)
                                                           CTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         >  1:5732082‑M1/1‑68 (MQ=255)
                                                            tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg         >  1:22734793‑M1/1‑7 (MQ=255)
                                                            TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:17248569‑M1/67‑1 (MQ=255)
                                                            TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:19176550‑M1/67‑1 (MQ=255)
                                                             GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc       >  1:13022524‑M1/1‑68 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:8561676‑M1/1‑5 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:1853860‑M1/1‑5 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATACACGGCGGGCGCAGGTGCGGCGTTGACCGGCTGTGACAAACGCCg         <  1:30070878‑M1/65‑1 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:6101938‑M1/65‑1 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:36837659‑M1/65‑1 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:29936266‑M1/65‑1 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcc      >  1:27268726‑M1/1‑4 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag     <  1:28230361‑M1/68‑65 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:10921276‑M1/1‑4 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:16515690‑M1/1‑4 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagcgcgatgcgtttcttgctcgtctggttgccgtca      >  1:32203935‑M1/1‑4 (MQ=255)
                                                               GCCCCGGTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:25153576‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:7877857‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:8872625‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:10093919‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:16730712‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:1789768‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:24425074‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:29151597‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:33806623‑M1/68‑1 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag     >  1:14875958‑M1/1‑3 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag     >  1:20854924‑M1/1‑3 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag     >  1:24195388‑M1/1‑3 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag     >  1:10765402‑M1/1‑3 (MQ=255)
                                                                CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa    <  1:15964490‑M1/68‑1 (MQ=255)
                                                                CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa    <  1:27599888‑M1/68‑1 (MQ=255)
                                                                 CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa    >  1:36604438‑M1/1‑67 (MQ=255)
                                                                  |                                                                   
CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT  >  CP009273/1823063‑1823196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.