| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3462138 | 524 (1.110) | 26 (0.080) | 10/78 | NT | 5.4% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 548 (1.670) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
Only 100 of 906 total aligned reads displayed.
GGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462071‑3462205 | ggTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTg > 1:11760303/1‑68 (MQ=255) gTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGt > 1:5099379/1‑68 (MQ=255) ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTa > 1:22826947/1‑68 (MQ=255) aTTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAGCCCACCAGGCGTTCTTGTaaa < 1:4154404/68‑1 (MQ=255) aTTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaaa < 1:7992613/68‑1 (MQ=255) ttGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAc < 1:29657751/68‑1 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa > 1:32886575/1‑68 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:26375491/68‑1 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:17079081/68‑1 (MQ=255) ggAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTctaaaaga > 1:23760392‑M1/1‑60 (MQ=255) ggAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTctaaaaat > 1:26712763‑M1/1‑60 (MQ=255) aGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt > 1:29953693/1‑67 (MQ=255) tttCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAcc < 1:30811157/67‑1 (MQ=255) ttCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCAt < 1:23967031/68‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTTTAAAAATTACCATTGtaaa > 1:7766750/1‑68 (MQ=39) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaaa > 1:16073638/1‑68 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaaa > 1:18671128/1‑68 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaa < 1:15866714/67‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaa < 1:36574271/67‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:20276799/65‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGa < 1:4419289/65‑1 (MQ=255) tACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAAc < 1:362224/67‑1 (MQ=255) tACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAAc < 1:15145/67‑1 (MQ=255) atcccgtGGGCAATTTTTAGCGCCTACCCACCAGGCGTTCTTataaatgccgccgttatagataacgt < 1:25873127‑M1/66‑27 (MQ=255) aCCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACAt < 1:2105651/68‑1 (MQ=255) ccccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATg > 1:33587015/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCCCCAGGCGTTCTTGTAAACATTACCTTTGAATATAACATgg > 1:13711818/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTCCCATTGAAAATAACATgg > 1:30432169/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:38709346/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:8536916/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAAATAGCCTTTATAAATAACATgg > 1:21454827/1‑68 (MQ=37) cGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAAAAATACCGTTGAAAATAACATggga > 1:34887136/1‑66 (MQ=38) ggCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAtt > 1:29342495/1‑68 (MQ=255) tCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCt < 1:36823268/68‑1 (MQ=255) tttAGACCCAACCCACCAGGCGTTCTTttaaatgccgccgttatagataacgt < 1:1464703‑M1/53‑27 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:35117020/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:2070593/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:18907782/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:35500960/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:35713491/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAACATTACCACTGAAAATAACATGGTAAATTTCGCTACCtt < 1:31863683/68‑1 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACTTGGTAAATTTCGCTACCtt > 1:9719499/1‑66 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:10498240/1‑66 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:19984283/1‑66 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACAAGGTAAAATACGCTACCtt > 1:3434242/1‑66 (MQ=39) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAATTTTCGCTACCtt > 1:17851794/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:16775502/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:5970387/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:19661191/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:27121920/1‑65 (MQ=255) aacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGc < 1:14004401/68‑1 (MQ=255) acccaCCAGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacc < 1:19205826‑M1/68‑52 (MQ=255) ccaccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctt > 1:16491218‑M1/1‑15 (MQ=255) ccaccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctt < 1:25428423‑M1/68‑54 (MQ=255) ccaccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGc < 1:28872332/68‑1 (MQ=255) caccaGGCGTTGTTataaatgccgccgttatagataacgtaccatgtagaagaaccgtcctgacctt > 1:5692648‑M1/1‑14 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:12795575‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:32217427‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:34689349‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:10720231‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:37254604‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:6331874‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:6638847‑M1/68‑55 (MQ=255) caccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCt < 1:15589485/68‑1 (MQ=255) accaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt > 1:23396450‑M1/1‑13 (MQ=255) ccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTcc > 1:39001454/1‑68 (MQ=255) caGGCGTTGTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttcca > 1:37458161‑M1/1‑11 (MQ=255) caGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttcca > 1:26823563‑M1/1‑11 (MQ=255) ggCGTTCTTataaatgccgcggttatagttaacgtagcatgtagaagaaccttcctgacctttccagg < 1:24270036‑M1/68‑60 (MQ=255) ggCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccag > 1:38330915‑M1/1‑9 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct > 1:2740429‑M1/1‑7 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:13281630‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:14342642‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:37860238‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:17509358‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:12033287‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:21815383‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:23569441‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtacaatgtagaagaaccttcctgacctttccaggct > 1:7151654‑M1/1‑7 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:27698781/66‑1 (MQ=255) cGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCt > 1:22476845/1‑68 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggcta < 1:33955675‑M1/68‑63 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:7342159‑M1/67‑62 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:8875826‑M1/67‑62 (MQ=255) gTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCt < 1:28051003/67‑1 (MQ=255) ttCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct > 1:11376539‑M1/1‑5 (MQ=255) ttCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCtt > 1:33125432/1‑67 (MQ=255) tCTTtttaatgcggccgttatagataacgtaccatgtagaagaaccttcctgacctttcgaggctact < 1:1310989‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:31602196‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctac < 1:2313002‑M1/67‑64 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTg < 1:18275123/67‑1 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTg < 1:12522987/67‑1 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTg < 1:28452626/67‑1 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGc < 1:9373581/68‑1 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGc < 1:4827598/68‑1 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGc < 1:2225639/68‑1 (MQ=255) cTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCa > 1:3123035/1‑68 (MQ=255) cTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCa > 1:24569141/1‑68 (MQ=255) tataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactaca < 1:10088592‑M1/68‑68 (MQ=255) tGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAt < 1:24812477/68‑1 (MQ=255) | GGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462071‑3462205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |