New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3920778 =295 (0.630)42 (0.110) 16/88 NT 13.7% coding (264/993 nt) asnA asparagine synthetase A
?CP009273 3920817 = 296 (0.800)coding (303/993 nt) asnA asparagine synthetase A

Only 100 of 857 total aligned reads displayed.

AGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920750‑3920884
                                                                   |                                                                   
ttgcaacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccc                                                                     <  1:31981027‑M2/1‑1 (MQ=255)
  aCCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                                                                   >  1:15782715/1‑68 (MQ=255)
  aCCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                                                                   >  1:10748183/1‑68 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGcccc                                                                     <  1:36728850/65‑1 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGcccc                                                                     <  1:22389617/65‑1 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                                                                   <  1:18156458/67‑1 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:2397332/1‑68 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:37392879/1‑68 (MQ=255)
   ccTTAGGGCAACACGACTTAAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:11196286/1‑68 (MQ=255)
       aGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg                                                              <  1:2196484/68‑1 (MQ=255)
         ggCAACACGACTTCAGCGCGGGCCAACGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa                                                             >  1:33164892/1‑67 (MQ=255)
          gCAACACGCCTTCAGCGCGGGCGCAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGccc                                                           >  1:33865886/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCCCATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:30697072/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAATGCCCTTCGCCCCGATGAAGAcc                                                           >  1:29785644/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:5959524/1‑68 (MQ=255)
             agccggtcttcatcggggcgaagggctttcatgtgcgggtacagcccttcgcccCGATGAAGACCGTc                                                        <  1:16816279‑M2/14‑1 (MQ=255)
             acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc                                                        <  1:7795396/68‑1 (MQ=255)
               acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt                                                      >  1:13710106/1‑68 (MQ=255)
                cGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt                                                      >  1:37578423/1‑67 (MQ=255)
                     tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg                                                >  1:27682292/1‑68 (MQ=255)
                     tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg                                                >  1:19216592/1‑68 (MQ=255)
                     tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg                                                >  1:11766519/1‑68 (MQ=255)
                     tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCGTCGCCCCGATGAAGACCGGCTTTCTCCg                                                >  1:6552901/1‑68 (MQ=255)
                      cAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGt                                               <  1:19519446/68‑1 (MQ=255)
                       aGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGtt                                              >  1:9473465/1‑68 (MQ=255)
                       aGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGtt                                              >  1:13877866/1‑68 (MQ=255)
                         cgcgGGCGAAGGNCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:37127188/1‑68 (MQ=255)
                         cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCCTTGc                                            >  1:25008827/1‑68 (MQ=255)
                           gGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            <  1:31767374‑M1/65‑1 (MQ=255)
                           gGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCATTATccgtagc                                            <  1:34939277‑M1/65‑4 (MQ=255)
                               cgacgggctttcatgtgcgtgtaccgcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       <  1:4159506‑M2/31‑1 (MQ=255)
                               CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:31067880‑M1/1‑47 (MQ=255)
                                gaagggctttcatgtgcgtgtacagccctccgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     <  1:68239‑M2/33‑1 (MQ=255)
                                gaagggctttcatgtcccttaacaccccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      <  1:37873982‑M2/32‑1 (MQ=255)
                                gaagggcgttcaggggcgtgtaccgcccttcgcccCGATGAAGACCGTCTTTCGCCGTTGCACTCgg                                      <  1:21197414‑M2/32‑1 (MQ=255)
                                GAAGGGCTGTACAGGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:38314441‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:13391922‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:26454413‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:36448603‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:4413530‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:28442303‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:25442301‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:30060006‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:22875202‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:14094188‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:8840470‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:19967048‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:34190968‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:1009632‑M1/1‑68 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:21508980‑M1/1‑68 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGGCTTTCTCCGTTGCACTCgg                                      >  1:3154508‑M1/1‑67 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:27433140‑M1/68‑1 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:14432837‑M1/68‑1 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:1613816‑M1/68‑1 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:5305535‑M1/68‑1 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:26876359‑M1/68‑1 (MQ=255)
                                     gctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATg                                >  1:12899317‑M2/31‑68 (MQ=255)
                                     GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTa                                  >  1:20608667‑M1/1‑66 (MQ=255)
                                     GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:29037257‑M1/1‑67 (MQ=255)
                                     GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:35757286‑M1/1‑67 (MQ=255)
                                     GCTGTACACGCACATCAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:20319263‑M1/1‑67 (MQ=255)
                                           cacGCACATGAAAGCCCTTCGCCCCTATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc                          <  1:30504029/68‑1 (MQ=255)
                                           cacGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc                          >  1:12466573/1‑68 (MQ=255)
                                           cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTGTGTTGAcc                          >  1:7168719/1‑68 (MQ=255)
                                           cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc                          >  1:26176289/1‑68 (MQ=255)
                                           cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc                          >  1:17165390/1‑68 (MQ=255)
                                            acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         <  1:8100084/68‑1 (MQ=255)
                                            acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         <  1:35445272/68‑1 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:17549941/68‑1 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:35136992/68‑1 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:15405449/68‑1 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:2370045/68‑1 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:8457562/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:24269601/1‑68 (MQ=255)
                                                 caTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg                    <  1:10397014/68‑1 (MQ=255)
                                                 caTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCAATGTTGACCAGTggg                    <  1:14870724/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCTGTCTATGTTGACCAGTGGGa                   <  1:39091474/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:628515/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:4900084/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:28731533/68‑1 (MQ=255)
                                                      aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg               >  1:35975814/1‑68 (MQ=255)
                                                      aaGCCCTTCGCCCCGATGAAGACCGTCTATCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg               >  1:23260356/1‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:38595319‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:29200032‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:33417541‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGGTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:4538847‑M2/12‑68 (MQ=255)
                                                          ccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAc           >  1:32362163‑M2/10‑68 (MQ=255)
                                                           cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg          <  1:9078750‑M2/60‑1 (MQ=255)
                                                             tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg        <  1:2723086‑M2/62‑1 (MQ=255)
                                                             tcgcccCGATGAAGACCGTCTTGCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg        <  1:16492572‑M2/62‑1 (MQ=255)
                                                               gcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTa      >  1:32763009‑M2/5‑68 (MQ=255)
                                                               gcccCGATGAAGACCGTCTTTCTCAGTTGCACTCTGTCTATGTTGACCAGTGGGACTGGGAACGCGTa      <  1:24637419‑M2/64‑1 (MQ=255)
                                                                cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa     >  1:36203232‑M2/4‑68 (MQ=255)
                                                                cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa     >  1:12046625‑M2/4‑68 (MQ=255)
                                                                cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa     >  1:18947465‑M2/4‑68 (MQ=255)
                                                                cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa     >  1:7411560‑M2/4‑68 (MQ=255)
                                                                cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa     >  1:38816730‑M2/4‑68 (MQ=255)
                                                                 ccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGTCCAGTGGGACTGGGAACGCGTAAt    <  1:15106844‑M2/66‑1 (MQ=255)
                                                                 ccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAAt    >  1:25905822‑M2/3‑68 (MQ=255)
                                                                   cGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATgg  <  1:28123206/68‑1 (MQ=255)
                                                                   |                                                                   
AGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920750‑3920884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.