| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 353255 | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (61/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 353266 | NA (NA) | noncoding (72/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 473 total aligned reads displayed.
TCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGC > CP009273/353219‑353333 | ccGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTg > 1:27866458/1‑68 (MQ=33) ccGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTg > 1:22707860/1‑68 (MQ=33) ccGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTg > 1:19312237/1‑68 (MQ=33) cGGCCTACGTAGAGGACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:27500850/1‑68 (MQ=25) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:24812879/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:33645871/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:17203224/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa < 1:5210148/68‑1 (MQ=35) cGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:5930571/1‑68 (MQ=35) ggCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAt < 1:9472239/68‑1 (MQ=37) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:21167512/1‑65 (MQ=35) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:1538619/1‑65 (MQ=35) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGa > 1:32413644/1‑65 (MQ=35) ccTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATc < 1:22241737/67‑1 (MQ=39) tACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtgt < 1:5479111/68‑1 (MQ=40) aCGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCtgtg < 1:26063635/68‑1 (MQ=40) gTAGAGCACTGATCTCGTAGGCCTGATATGGGTAGCGCATCATGCAATTCCAGCCGCTGATCTGTGTc < 1:31896832/68‑1 (MQ=14) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:7798730/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:6672/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:10913204/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:23852610/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:34223696/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:32997163/1‑68 (MQ=40) gTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTc > 1:7095455/1‑68 (MQ=40) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:3614663/1‑68 (MQ=40) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:22435641/1‑68 (MQ=40) tAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCa > 1:33207725/1‑68 (MQ=40) agagCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAg < 1:13298866/68‑1 (MQ=40) gaaCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCTGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:10599605/3‑67 (MQ=255) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:11033322/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:20515738/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:19404257/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:13464657/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:36712765/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:6358047/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:12104793/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg < 1:15876690/67‑1 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:15193520/1‑67 (MQ=40) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAACTGTGTCAGCg > 1:8547182/1‑67 (MQ=25) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCGGATCTGTGTCAGCg > 1:17588727/1‑67 (MQ=25) gCACTGAACTCGTAGGCCTGATAAGCGTAGCGCAACAGGCAATTCCAGCCGCTGATCTGTGTCAGCg > 1:16597987/1‑67 (MQ=255) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCgg < 1:1821983/66‑1 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:1972734/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:28273528/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:31288884/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:37425845/1‑68 (MQ=40) aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCt > 1:13136748/1‑68 (MQ=40) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCtgg < 1:1641948/68‑3 (MQ=255) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGAACTGTGTCAGCGGCTa > 1:30988701/1‑67 (MQ=25) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGt > 1:27131342/1‑68 (MQ=40) cTCGTATGCCTGATAAGCGTAGCGCATCAGGAAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTg > 1:1801897/1‑68 (MQ=255) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 1:4462872/68‑1 (MQ=40) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGa < 1:25027533/68‑1 (MQ=40) cGTAGGCCTGCTAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat < 1:18394403/68‑1 (MQ=255) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat > 1:23675956/1‑68 (MQ=40) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGat < 1:31553478/68‑1 (MQ=40) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGatta > 1:34947035/1‑67 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattca < 1:8043151/68‑1 (MQ=40) ggCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:14630689/1‑68 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:39046016/1‑68 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:32365785/1‑68 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:21573208/1‑67 (MQ=40) gCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat > 1:20266606/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcatt > 1:12510404/1‑67 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat < 1:30596089/66‑1 (MQ=40) ccTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcat < 1:25778221/66‑1 (MQ=40) cTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGattcattc > 1:16971582/1‑67 (MQ=255) tAATCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTCTGTCAGCGGCTACCTTGATTCATTACCGcc > 1:27330128/1‑68 (MQ=14) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTTCCGc < 1:11973286/67‑1 (MQ=25) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGcc > 1:38133710/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGcc > 1:19987574/1‑68 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:14755250/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:10440536/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:6915919/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:37089082/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:10226345/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:18659157/67‑1 (MQ=255) tAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGc < 1:29327693/67‑1 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCca > 1:37690124/1‑68 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCca < 1:29762853/68‑1 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGCca > 1:29154012/1‑68 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGCca > 1:14393001/1‑68 (MQ=255) aGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCca > 1:11816349/1‑67 (MQ=255) aGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCca > 1:35909264/1‑67 (MQ=255) aGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTACCGCca > 1:23216208/1‑67 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaaca > 1:5779050/1‑67 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaaca > 1:26243861/1‑67 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaaca > 1:11530003/1‑67 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCcaaca > 1:1616741/1‑67 (MQ=255) gTAGCGCATCAGGCAATTCCAGCCGCTGATATGTCTCAGCGGCTACAGTGATTCATTCCCGCcaaca > 1:36493602/1‑67 (MQ=14) gTAGCGCATCAGGCAATTACAGCCGCTGATCTGTGTCAGCGGCTACAGTGATTCATTACCGCcaaca > 1:2891209/1‑67 (MQ=14) aGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCaacaac < 1:8380724/67‑1 (MQ=255) gcgcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAAcc > 1:30281128/1‑67 (MQ=255) cgcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:9096031/1‑68 (MQ=255) gcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:4810048/1‑67 (MQ=255) gcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:31163588/1‑67 (MQ=255) gcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:24272890/1‑67 (MQ=255) gcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:3343382/1‑67 (MQ=255) gcATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACcgc > 1:25355611/1‑67 (MQ=255) cATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCgcgc > 1:35446282/1‑68 (MQ=255) | TCCGGCCTACGTAGAGCACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCTGATCTGTGTCAGCGGCTACCGTGATTCATTCCCGCCAACAACCGCGC > CP009273/353219‑353333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |