| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 379 (0.800) | 95 (0.280) | 32/80 | NT | 29.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 187 (0.550) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
Only 100 of 499 total aligned reads displayed.
GGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAT > CP009273/1205008‑1205142 | tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt > 1:13257291‑M2/66‑68 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt > 1:16293391‑M2/66‑68 (MQ=255) cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt > 1:318774/1‑68 (MQ=255) gtaGTTGCTGAAGGCCAGGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt < 1:30051282/65‑1 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt > 1:35007639/1‑68 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt > 1:35653383/1‑68 (MQ=255) gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt > 1:18192766/1‑68 (MQ=255) aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg > 1:28981357‑M2/61‑68 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 1:2810679‑M2/60‑68 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa > 1:38014848‑M2/60‑68 (MQ=255) cggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaa > 1:13869144‑M2/58‑68 (MQ=255) cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa > 1:6088108/1‑68 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa > 1:5108403/1‑68 (MQ=255) tgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATg > 1:1791664‑M2/55‑68 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGCGCCTTCTCCCCACCCAACGTTTATGAAAATg > 1:35399541/1‑68 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:20853422/1‑68 (MQ=255) aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg > 1:5419218/1‑68 (MQ=255) aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga > 1:10190755/1‑68 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa > 1:30829914/1‑68 (MQ=255) ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa > 1:1881815/1‑68 (MQ=255) gtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa < 1:23296746‑M2/16‑1 (MQ=255) gtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaa < 1:19525244‑M2/16‑1 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag > 1:21619630/1‑68 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag > 1:29167221/1‑68 (MQ=255) gCCACGGAACCGGGACACCAACAGCTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag > 1:9292042/1‑68 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaag < 1:36308475/67‑1 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa < 1:28504894/66‑1 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa < 1:24454178/66‑1 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaaga < 1:882664‑M2/18‑1 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga < 1:22339749/67‑1 (MQ=255) taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt < 1:10688973‑M2/21‑1 (MQ=255) tgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc > 1:15516108‑M2/45‑68 (MQ=255) aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc > 1:22900235/1‑68 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa > 1:11903158‑M2/44‑68 (MQ=255) aCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa > 1:6269735/1‑68 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg < 1:16014884/68‑1 (MQ=255) gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGc < 1:15144050/68‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc > 1:26284334‑M2/41‑68 (MQ=255) gACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaa > 1:4753270/1‑68 (MQ=255) cgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaa > 1:13469712‑M2/39‑68 (MQ=255) cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa < 1:1255549/67‑1 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGc < 1:11519254/68‑1 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGc < 1:31488308/68‑1 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGc < 1:30271908/68‑1 (MQ=255) accAGGTAATGCAGAGCCTTCTCCCGAACCAACGTTTATCAAAATGAAGAAATAACAAGCAAATGGca > 1:27341797/3‑68 (MQ=255) aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca > 1:2865881/1‑68 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:36027862/1‑68 (MQ=255) aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 1:22073218/1‑68 (MQ=255) tgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:17185287‑M2/41‑1 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:25617898/1‑67 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:19017596/1‑67 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat < 1:1116964/66‑1 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcaat < 1:33736714/67‑3 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:8305452/67‑1 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt < 1:25314407/67‑1 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt > 1:202158/1‑65 (MQ=255) tGCAGAGCCTTCTCCCAAACCTACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:2371983/1‑67 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:35196360/1‑67 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:8604449/1‑67 (MQ=255) tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:33957711/1‑67 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:4250356‑M2/46‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:7643656/68‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 1:37346712/68‑1 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:9555972/1‑66 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:1001779/1‑68 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:2132507/1‑68 (MQ=255) cAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAACATTCATGCt > 1:32221423/1‑68 (MQ=255) agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:584929/1‑68 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa < 1:28283658‑M2/51‑1 (MQ=255) gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt > 1:17382331/1‑67 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa < 1:32767610‑M2/51‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa < 1:16464569‑M2/51‑1 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa < 1:31717659‑M2/51‑1 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGGTTTTACCa > 1:36562382‑M2/15‑68 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa < 1:18377575‑M2/54‑1 (MQ=255) ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg < 1:6543280‑M2/56‑1 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg > 1:14949965‑M2/11‑68 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg > 1:38291601‑M2/11‑68 (MQ=255) ccacaccaaCGTTTATGAAAATGAAGAAATAACTAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:7247612‑M2/59‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:12265806‑M2/59‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg > 1:26845825‑M2/10‑68 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:38379484‑M2/59‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:16808210‑M2/59‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg < 1:17064932‑M2/59‑1 (MQ=255) ctaaccaaCGTTTATGAAAATGAAGAAATAACATGCAAATGGCATCATTGCTTCTTTTACCAGGGGGa < 1:14156404‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:27746534‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:14571172‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:39086557‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:38896723‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:30438618‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:37603669‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:22588491‑M2/60‑1 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:24881736‑M2/60‑1 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt < 1:34471672‑M2/62‑1 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 1:36845766‑M2/7‑68 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:19816922‑M2/6‑68 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:33504359‑M2/6‑68 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:12946031‑M2/6‑68 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt > 1:32377227‑M2/6‑68 (MQ=255) cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt > 1:29475618/1‑68 (MQ=255) | GGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAT > CP009273/1205008‑1205142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |