| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1948765 | NA (NA) | 4 (0.010) | 3/98 | NT | NA | noncoding (80/98 nt) | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3734331 = | NA (NA) | noncoding (8/98 nt) | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 591 total aligned reads displayed.
GGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGAT > CP009273/3734266‑3734398 | gggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATgc < 1:30828654/67‑1 (MQ=255)gggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATgc < 1:35627173/67‑1 (MQ=255)gggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATgc < 1:35304031/67‑1 (MQ=255)gggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATgc < 1:37368931/67‑1 (MQ=255)gggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATgc < 1:3425980/67‑1 (MQ=255)gggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATgc < 1:24767756/67‑1 (MQ=255)gggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCGGAAAGTCACTAAAAATTGCCTGATgc < 1:36978736/67‑1 (MQ=255) ggTGAAGATTCTGGAGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATgcg < 1:9397000/67‑1 (MQ=255) gTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATgcgc < 1:7776060/67‑1 (MQ=255) gTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATgcgc < 1:16288314/67‑1 (MQ=255) gTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCt > 1:30573152/1‑68 (MQ=255) gAAGATTCTGGCTGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:37568123/68‑1 (MQ=255) gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:28673731/68‑1 (MQ=255) gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:28853036/68‑1 (MQ=255) gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:9625298/68‑1 (MQ=255) gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:33940515/68‑1 (MQ=255) gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:23578069/68‑1 (MQ=255) gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:34759816/68‑1 (MQ=255) gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:23944993/68‑1 (MQ=255) gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:12933464/68‑1 (MQ=255) aaGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTAc < 1:12141073/67‑1 (MQ=255) gATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCt > 1:31051329/1‑68 (MQ=255) aTTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCtt > 1:8858626/1‑68 (MQ=255) aTTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCtt > 1:2013660/1‑68 (MQ=255) ttCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCt < 1:16987639/66‑1 (MQ=255) ttCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTa < 1:11565495/68‑1 (MQ=255) ttCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTa < 1:26124693/68‑1 (MQ=255) ttCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTa < 1:8461695/68‑1 (MQ=255) ttCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTa < 1:21582969/68‑1 (MQ=255) gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACg > 1:36016797/1‑59 (MQ=255) gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAg > 1:4407213/1‑67 (MQ=255) gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAg > 1:10021507/1‑67 (MQ=255) cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:6401969/67‑1 (MQ=255) cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:31411333/67‑1 (MQ=255) cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:37933435/67‑1 (MQ=255) cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:36651064/67‑1 (MQ=255) cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:3496670/67‑1 (MQ=255) cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:28351912/67‑1 (MQ=255) cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:12667151/67‑1 (MQ=255) cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAgg < 1:22367229/67‑1 (MQ=255) aaGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCt < 1:38277820/67‑1 (MQ=255) gagaTAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACa > 1:19581577/1‑68 (MQ=255) aaaccttgctaattcaatatattgcagggactatgtaggcctgatGCGCTATGCTTATCAGGCCTACa > 1:26944190‑M2/46‑68 (MQ=255) tAGAAAGAGCCTGGGCTGAAAGTCAGTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGa < 1:26760959/67‑1 (MQ=255) tAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGa < 1:10214528/67‑1 (MQ=255) tAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGa < 1:5576760/67‑1 (MQ=255) aGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt < 1:32778945/68‑1 (MQ=255) aGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt < 1:27833056/68‑1 (MQ=255) aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt > 1:23103542/1‑66 (MQ=255) aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt > 1:457515/1‑66 (MQ=255) aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt > 1:38581498/1‑66 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtt > 1:33212389/1‑65 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:15591803/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:363174/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:31740031/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt < 1:1719197/68‑1 (MQ=255) aaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGAAGCTCTACGCTTATCAGGCCTACATGATTTCt < 1:6011334/68‑1 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:24575865/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:13638354/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:25886156/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:30011359/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:14916930/1‑67 (MQ=255) agagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCt > 1:15285409/1‑67 (MQ=255) agCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCa > 1:20789982/1‑68 (MQ=255) gCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc < 1:20927441/66‑1 (MQ=255) gCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc < 1:33674019/66‑1 (MQ=255) gCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc < 1:18936371/66‑1 (MQ=255) gCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc < 1:32096796/66‑1 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat > 1:27098271/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat > 1:26487461/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat > 1:14539864/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGACTACATGATTTCTGCAat > 1:14764167/1‑68 (MQ=255) ccTGGGCTGAAAGTCACTAAAAATAGCCTGATGCGCTACGATTATCAGGACTACATGATTTCTGCAat > 1:15913303/1‑68 (MQ=21) cTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAata < 1:1672562/68‑1 (MQ=255) cTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAata < 1:27281834/68‑1 (MQ=255) cTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAata < 1:33384146/68‑1 (MQ=255) tgtgCTGAAAGTCACTTAAAATTTCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:7104077/65‑1 (MQ=18) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:17674526/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:21866366/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:107529/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:29590486/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:29893031/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:22607553/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:32445441/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:17851567/68‑1 (MQ=255) tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat < 1:18726925/68‑1 (MQ=255) gggCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatata < 1:11246416/68‑1 (MQ=255) aGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAAttt > 1:1748758/1‑68 (MQ=255) aaaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGgaagaa < 1:8256236/68‑1 (MQ=255) aaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAt > 1:18217250/1‑68 (MQ=255) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAtt < 1:4019826/68‑1 (MQ=255) aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAtt < 1:31279311/68‑1 (MQ=255) aaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAttt > 1:33010463/1‑68 (MQ=255) ttGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGt > 1:25077322/1‑68 (MQ=255) gatGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCg < 1:7557154‑M2/65‑1 (MQ=255) atGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCgg > 1:38839772‑M2/3‑68 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCgg < 1:14076405‑M2/66‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCgg < 1:25547822‑M2/66‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGa > 1:29155421‑M2/2‑68 (MQ=255) tGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGa < 1:11922495‑M2/67‑1 (MQ=255) | GGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGAT > CP009273/3734266‑3734398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |