| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2140134 | NA (NA) | 4 (0.010) | 4/98 | NT | NA | noncoding (54/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 2140164 | NA (NA) | noncoding (84/84 nt) | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 599 total aligned reads displayed.
CGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAAC > CP009273/2140098‑2140231 | cgcgTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCg > 1:31279041/1‑68 (MQ=255)cgcgTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCg > 1:10878250/1‑68 (MQ=255) gcgTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGa < 1:11543436/68‑1 (MQ=255) gTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGAc < 1:27968202/67‑1 (MQ=255) ttATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAAc < 1:4640717/68‑1 (MQ=255) aTCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGt < 1:3620608/68‑1 (MQ=255) aTCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGt < 1:22988751/68‑1 (MQ=255) tCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTc > 1:26921685/1‑68 (MQ=255) cATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCa > 1:38174319/1‑68 (MQ=255) cATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCa > 1:31009227/1‑68 (MQ=255) tGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCAt > 1:33488575/1‑67 (MQ=255) tGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATg < 1:14724803/68‑1 (MQ=255) gCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGc < 1:17269049/68‑1 (MQ=255) ccTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCt > 1:35085010/1‑68 (MQ=255) ccTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCt > 1:32593557/1‑68 (MQ=255) ccTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCt > 1:36404534/1‑68 (MQ=255) ccTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCt > 1:10087181/1‑68 (MQ=255) cTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCt > 1:23729702/1‑67 (MQ=255) aaaTCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCg > 1:7053254/1‑66 (MQ=255) aaaTCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCg > 1:29656912/1‑66 (MQ=255) aaaTCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCg > 1:19154209/1‑66 (MQ=255) aaaTCGCTCATTCCCCAGGCCGGATAAGGCGCACGCACCGCATCCGGCGACCAACGTCATGCTTCg > 1:24264517/1‑66 (MQ=255) aTCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTg > 1:12297667/1‑68 (MQ=255) aTCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTg > 1:7914978/1‑68 (MQ=255) tCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTgg > 1:22152570/1‑68 (MQ=255) tCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGc < 1:16395568/68‑1 (MQ=255) tCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGc < 1:37214502/68‑1 (MQ=255) tCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGc < 1:27229094/68‑1 (MQ=255) ccccTGGCCGGATAAGGCGCTCGCACCGCATGCGGGGACGAACGTCATGGTTCGTCTGGTTGCCAGcc < 1:18562252/68‑1 (MQ=25) ccccAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAg > 1:16851925/1‑66 (MQ=255) ccccAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGcc < 1:14320430/68‑1 (MQ=255) cccAGGCCGGATAAGGCGCTCTCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCt < 1:5075316/68‑1 (MQ=255) cccAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCt < 1:20480523/68‑1 (MQ=255) cccAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCt < 1:21812384/68‑1 (MQ=255) cccAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCt < 1:15771085/68‑1 (MQ=255) cAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTc < 1:29232385/68‑1 (MQ=255) ggCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCg > 1:31782108/1‑68 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTcc > 1:37738879‑M1/1‑65 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTcc > 1:32240361‑M1/1‑65 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTcc > 1:36844320‑M1/1‑65 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTcc > 1:21197580‑M1/1‑65 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTcc > 1:19445962‑M1/1‑65 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTcc > 1:11753368‑M1/1‑65 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTcc > 1:838723‑M1/1‑65 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGta < 1:1710170‑M1/68‑1 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGta < 1:11271927‑M1/68‑1 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGt > 1:9013222‑M1/1‑67 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGt > 1:31416834‑M1/1‑67 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGt > 1:18936230‑M1/1‑67 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGt > 1:35863053‑M1/1‑67 (MQ=255) CCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGt > 1:24648874‑M1/1‑67 (MQ=255) CGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGtat > 1:5896992‑M1/1‑68 (MQ=255) CGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGtat > 1:35370082‑M1/1‑68 (MQ=255) CGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGta > 1:10523450‑M1/1‑67 (MQ=255) ATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATAcc < 1:28613961‑M1/68‑1 (MQ=255) TAAGTCGGTCGCACCGCATCCGGCGACCAACGTCATGCTTGGTCTGGTTGCCAGGCTTCGGTATACCa > 1:7467806‑M1/1‑68 (MQ=255) TAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGTTTGCCAGCCTTCCGTATACCa < 1:34805788‑M1/68‑1 (MQ=255) TAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCa > 1:34336505‑M1/1‑68 (MQ=255) aaGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAg < 1:18120584/68‑1 (MQ=255) aGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGa > 1:22483508/1‑68 (MQ=255) ggCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGat > 1:33804211/1‑68 (MQ=255) gcgcTCGCACCGCATCCGGCGCCCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGata > 1:1887491/1‑68 (MQ=255) cgcTCGCACCGCATCCGGCGCCCAACGTCATGCTTCGTCTGGTTGCCAGCCTGCCGTATCCCAGatat > 1:15064456/1‑68 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTGTGGTTGCCAGCCTTCCGTATACCAGat < 1:37991295/66‑1 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGatat > 1:2992669/1‑68 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGatat > 1:33154399/1‑68 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGat < 1:12678165/66‑1 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGat < 1:662688/66‑1 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGat < 1:5540621/66‑1 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGat < 1:27708282/66‑1 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGat < 1:6281202/66‑1 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGat < 1:26165681/66‑1 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGat < 1:39109719/66‑1 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGat < 1:21342159/66‑1 (MQ=255) cgcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCACCCTTCCGTATACCAGatat > 1:13345092/1‑68 (MQ=255) gcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGatat < 1:38802907/67‑1 (MQ=255) gcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGatat < 1:4191914/67‑1 (MQ=255) gcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGatat < 1:9790423/67‑1 (MQ=255) gcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGatat < 1:10274287/67‑1 (MQ=255) gcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGatat < 1:16124169/67‑1 (MQ=255) gcTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGatat < 1:20954951/67‑1 (MQ=255) cTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGc > 1:9518164/1‑68 (MQ=255) tCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCa < 1:26482947/68‑1 (MQ=255) aCCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACa < 1:1526221/67‑1 (MQ=255) ccGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAgc < 1:34074838/68‑1 (MQ=255) ccGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAgc < 1:13701158/68‑1 (MQ=255) ccGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAgc < 1:38465344/68‑1 (MQ=255) ccGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAgc < 1:24997061/68‑1 (MQ=255) ccGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAgc < 1:3556196/68‑1 (MQ=255) ccGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAgc < 1:1768765/68‑1 (MQ=255) ctaatccGGCcgggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcatcaggcgat > 1:23885806‑M2/4‑10 (MQ=255) cGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAgc > 1:23292015/1‑67 (MQ=255) tCCGGCctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcatcaggcgatgggga < 1:1991116‑M2/68‑63 (MQ=255) tCCGGCctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcatcaggcgatgggga < 1:28943679‑M2/68‑63 (MQ=255) ccGGCctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcatcaggcgatggggaa < 1:28323482‑M2/68‑64 (MQ=255) ccGGCctggggaatgagcgatttgaaggcatgataagacgcgttagcgtcgcatcaggcgatggggaa > 1:25318564‑M2/1‑5 (MQ=255) cGGCctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcatcaggcgatggggaa < 1:37554399‑M2/67‑64 (MQ=255) gCctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcatcaggcgatggggaagc < 1:12906908‑M2/67‑66 (MQ=255) cctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcatcaggcgatggggaagcac < 1:25971730‑M2/68‑68 (MQ=255) cctggggaatgagcgatttgtaggcatgataagacgcgttagcgtcgcatcaggcgatggggaagcac < 1:14000934‑M2/68‑68 (MQ=255) | CGCGTCTTATCATGCCTACAAATCGCTCATTCCCCAGGCCGGATAAGGCGCTCGCACCGCATCCGGCGACCAACGTCATGCTTCGTCTGGTTGCCAGCCTTCCGTATACCAGATATGCAACAGCGCATAAGAAC > CP009273/2140098‑2140231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |