New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3256491 =603 (1.280)25 (0.070) 8/90 NT 5.2% coding (529/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic
?CP009273 3256545 = 433 (1.140)coding (475/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic

Only 100 of 781 total aligned reads displayed.

TAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTT  >  CP009273/3256478‑3256612
                                                                   |                                                                   
tAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAg                                                                     >  1:30944936/1‑68 (MQ=255)
 aGCGGTGCGACGTGCCGTGTAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg                                                                    <  1:27948352/68‑1 (MQ=255)
 aGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg                                                                    <  1:33115479/68‑1 (MQ=255)
 aGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAg                                                                     >  1:37870487/1‑67 (MQ=255)
 aGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAg                                                                     >  1:35584477/1‑67 (MQ=255)
 aGCGGGGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg                                                                    <  1:29154676/68‑1 (MQ=255)
  gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAgg                                                                    >  1:11977523/1‑67 (MQ=255)
   ttatacggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGcc                                                                  <  1:544108‑M2/4‑1 (MQ=255)
   ttatacggccTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGcc                                                                  <  1:7088824‑M1/58‑1 (MQ=255)
   cGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGcc                                                                  >  1:17674380/1‑68 (MQ=255)
   atatacggcctgccgtggaaatattatgaagagtaaggtgtacgccgttatggtttccacggcaGGcc                                                                  <  1:5053641‑M2/4‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc                                                                   <  1:24842603/66‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc                                                                   <  1:29512307/66‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                 >  1:28259550/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                 >  1:35116019/1‑68 (MQ=255)
     gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                >  1:19701906/1‑68 (MQ=255)
     atacggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGt                                                                <  1:25292433‑M2/6‑1 (MQ=255)
     atacggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGt                                                                <  1:8442171‑M2/6‑1 (MQ=255)
     atacggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGt                                                                <  1:37666914‑M2/6‑1 (MQ=255)
     atacggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGt                                                                <  1:9095523‑M2/6‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:5695166/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:18073910/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:22423521/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:31492669/67‑1 (MQ=255)
      tGCGACGTGACGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:23998/67‑1 (MQ=255)
       gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtat                                                              >  1:771674/1‑68 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata                                                             <  1:30456966/67‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata                                                             <  1:10008761/67‑1 (MQ=255)
           cGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaat                                                          >  1:32582888/1‑68 (MQ=255)
           cGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATAATTCCACGGCAGGCCGTataaat                                                          <  1:2894806/68‑1 (MQ=255)
           cGTGCCGTGGAAACCATAACGGCGGACCCCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaat                                                          >  1:1891506/1‑68 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaata                                                         >  1:14242671/1‑68 (MQ=255)
              GCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAg                                                       >  1:30197526‑M1/1‑68 (MQ=255)
                     AAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCgg                                                <  1:6550118‑M1/68‑1 (MQ=255)
                     AAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCgg                                                <  1:23393623‑M1/68‑1 (MQ=255)
                           tAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt                                          <  1:33596074/68‑1 (MQ=255)
                           tAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt                                          <  1:23600337/68‑1 (MQ=255)
                             aCGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:15101537/1‑68 (MQ=255)
                             aCGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:6056875/1‑68 (MQ=255)
                             aCGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCATTATAAATAAGCTTCCGGAGCCATCg                                        >  1:12640771/1‑68 (MQ=255)
                              cGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:20010987/1‑67 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:15985958/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:3395776/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:18621861/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:28645976/1‑66 (MQ=255)
                                  gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtgg                                   <  1:15361182/68‑1 (MQ=255)
                                  gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtgg                                   <  1:13309071/68‑1 (MQ=255)
                                  gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCcgg                                   <  1:8668577/68‑1 (MQ=255)
                                    acacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggt                                  <  1:19558554/67‑1 (MQ=255)
                                     cacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggtgg                                <  1:24517891/68‑1 (MQ=255)
                                      acCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGa                               >  1:27662015/1‑68 (MQ=255)
                                       ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                              >  1:20329895/1‑68 (MQ=255)
                                       ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                              >  1:13160343/1‑68 (MQ=255)
                                       ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                              >  1:2704853/1‑68 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                          >  1:38941493/1‑68 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                          >  1:22794495/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                        <  1:22013976/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                        <  1:27275875/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                        <  1:8264042/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                        <  1:16942697/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                        <  1:31131330/68‑1 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                       >  1:34368645/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                       >  1:10267364/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                       >  1:32908171/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                       >  1:19318735/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                       >  1:20659164/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTATGGTGGAAACTGGTa                       >  1:3594005/1‑68 (MQ=255)
                                                 cATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                         <  1:1727077/63‑1 (MQ=255)
                                                 cATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                         <  1:11821342/63‑1 (MQ=255)
                                                  ataataTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCaa                   <  1:4804150/68‑1 (MQ=255)
                                                  ataataTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCaa                   >  1:21088566/1‑68 (MQ=255)
                                                  ataataTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCaa                   >  1:16553766/1‑68 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:36543353/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:36860735/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:14928932/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:25173682/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:11408184/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:10964194/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:33741121/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:29847831/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:13581330/1‑67 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                       >  1:13737536/1‑59 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATAcc              >  1:21625704/1‑68 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATAcc              >  1:26543062/1‑68 (MQ=255)
                                                          tccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc           >  1:38313444‑M2/10‑68 (MQ=255)
                                                          tccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAAATGGTATCAAATACCGcc           >  1:9216891‑M2/10‑68 (MQ=255)
                                                            cacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAc         <  1:732357‑M2/61‑1 (MQ=255)
                                                            cacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAc         <  1:36193059‑M2/61‑1 (MQ=255)
                                                             acggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa          >  1:37168708‑M2/7‑66 (MQ=255)
                                                             acggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa          >  1:25820264‑M2/7‑66 (MQ=255)
                                                               ggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTg      >  1:31865485‑M2/5‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGGGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     >  1:6777851‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCCCCTGa     >  1:25535664‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     >  1:4486496‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     >  1:26170999‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     >  1:9697135‑M2/4‑68 (MQ=255)
                                                                 caGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     <  1:12979823‑M2/65‑1 (MQ=255)
                                                                 caGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     <  1:38597341‑M2/65‑1 (MQ=255)
                                                                  aGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAg    <  1:10500117‑M2/66‑1 (MQ=255)
                                                                  aGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGt   >  1:32328892‑M2/2‑68 (MQ=255)
                                                                   |                                                                   
TAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTT  >  CP009273/3256478‑3256612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.