| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,702,966 | T→A | 8.6% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,702,966 | 0 | T | A | 8.6% | 840.3 / 9.2 | 422 | R597R (CGT→CGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (122/231); new base A (28/2); total (171/251) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.45e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 451 total aligned reads displayed.
AGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGC > CP009273/1702899‑1703032 | aGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGt < 1:11054961/68‑1 (MQ=255) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:21719088/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:20246450/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:3686781/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:559810/65‑1 (MQ=35) cTAATGCGGAACCAGAACAACAGGTCGAACCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:21064048/65‑1 (MQ=25) cTAATGCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTAGAAGCGGCTATTGCCCGCGcc > 1:6784221/1‑68 (MQ=11) cTAATGCGGAACCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:38198984/65‑1 (MQ=25) aaTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCgcgcac > 1:34936387/1‑65 (MQ=11) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTGGCAGCCGCTATTGCCCGCGCCaacg > 1:2614606/1‑65 (MQ=11) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCGGCTATTGCCCGCGCCaacg > 1:10310750/1‑65 (MQ=11) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCCaatg > 1:34197626/1‑65 (MQ=11) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAgc > 1:36280322/1‑68 (MQ=35) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGCGCCAAAg > 1:28312593/1‑67 (MQ=11) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTAATGCCCGAGCTaacg > 1:20170015/1‑65 (MQ=11) gCGGAACCAGAACAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCAAAAg > 1:13584969/1‑67 (MQ=11) ggAACCAGAACCAGAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAgcac < 1:34710920/68‑3 (MQ=11) ggAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc > 1:37381700/1‑68 (MQ=14) aCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCa > 1:33263682/1‑68 (MQ=37) aCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCa < 1:21367374/68‑1 (MQ=37) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCaa > 1:12388627/1‑68 (MQ=35) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:39128946/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:15860328/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:2377576/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:22716450/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:15026270/68‑1 (MQ=37) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAg < 1:20664091/68‑1 (MQ=37) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAAGCCCACAAGcgcg > 1:10098504/1‑65 (MQ=11) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTgg > 1:29556588/1‑68 (MQ=18) caacaTGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGa < 1:5129745/68‑1 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGa > 1:11864374/1‑67 (MQ=35) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGa > 1:16333529/1‑67 (MQ=35) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGa > 1:26417407/1‑67 (MQ=25) aacaGGTCGATCCGCGCAAAGCCGCAGTCGCCGCCGCTATTGCCCGCGCCCACGCGAGCAAGGTggc > 1:4872572/1‑66 (MQ=2) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAAc > 1:17945712/1‑68 (MQ=25) ggTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGc > 1:31190714/1‑68 (MQ=25) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAAcctc > 1:7924991/1‑64 (MQ=25) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACa < 1:18362110/64‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGc < 1:22497747/66‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGc < 1:14317614/66‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGc < 1:24478138/66‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCa < 1:9316871/67‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCa < 1:10752409/67‑1 (MQ=35) tCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCa < 1:28914440/67‑1 (MQ=11) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:9685774/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:34361629/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:38704364/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:33880623/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:36938009/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:14013789/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg < 1:24835126/68‑1 (MQ=35) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAg > 1:29903140/1‑66 (MQ=35) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCGGGAACAGCAACAg > 1:7653741/1‑66 (MQ=25) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCt > 1:18759817/1‑68 (MQ=35) cgaaaaTCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTaa < 1:17450589/65‑1 (MQ=255) gcAAAGCCGCCGTGGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAt < 1:32299165/68‑1 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTAAt > 1:19742588/1‑68 (MQ=25) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCGCGAAAGCTGGACCAGCAACAGGCTAAt > 1:31986457/1‑68 (MQ=11) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAt > 1:4393931/1‑68 (MQ=25) gcAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAAt < 1:2195729/68‑1 (MQ=255) gcAAAGCCGCCGTAGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGGGGGCACAGCAGCAGGCTAAt > 1:24380177/1‑68 (MQ=11) ccgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGaa < 1:24756299/68‑1 (MQ=255) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGaa < 1:27218465/67‑1 (MQ=255) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAAc < 1:32997428/68‑1 (MQ=255) cgTTGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:17742673/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:12991416/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:9210395/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:7310295/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:19947641/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:860895/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:4133944/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:25626303/67‑1 (MQ=255) cgTCGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:6279439/67‑1 (MQ=255) cgTCGAAGCAGCTATAGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCa < 1:23076499/67‑1 (MQ=255) gTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCaga < 1:35076087/68‑1 (MQ=255) cGAAGCAGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaag < 1:25161177/68‑1 (MQ=255) gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga < 1:10625041/68‑1 (MQ=255) gAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCagaaga < 1:15437456/68‑1 (MQ=255) ccGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGATCCAGAAGAACAg > 1:36033812/1‑68 (MQ=255) cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAg < 1:28441619/67‑1 (MQ=255) cGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAg < 1:11357290/67‑1 (MQ=255) gCTATAGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGt < 1:23938212/68‑1 (MQ=255) tATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGtag > 1:19324499/1‑66 (MQ=255) aTTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGTCTAATGCGGAACCAGAAGAACAGGTCGa < 1:17045748/68‑1 (MQ=255) aTTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGa < 1:30675317/68‑1 (MQ=255) aTTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGa < 1:27680435/68‑1 (MQ=25) ttGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGa > 1:28023135/1‑67 (MQ=255) tGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGAt > 1:32717799/1‑67 (MQ=255) tGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGAt > 1:33618370/1‑67 (MQ=255) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAgg > 1:29262520/1‑36 (MQ=40) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGaaac > 1:38089857/1‑64 (MQ=255) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATcc > 1:12053227/1‑67 (MQ=255) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATcc > 1:6643006/1‑67 (MQ=40) cccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATcc > 1:16641651/1‑67 (MQ=255) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTCGATcctc > 1:14701518/1‑66 (MQ=255) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTTGATcctc > 1:31751141/1‑66 (MQ=255) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcgc > 1:37223377/1‑68 (MQ=40) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcgc < 1:19562696/68‑1 (MQ=40) ccGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCcgc > 1:13325237/1‑68 (MQ=255) cagTGCCATAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcgc < 1:35584718/66‑1 (MQ=255) | AGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGC > CP009273/1702899‑1703032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |