| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,036 | G→C | 6.5% | A621P (GCC→CCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,036 | 0 | G | C | 6.5% | 823.9 / 6.8 | 319 | A621P (GCC→CCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base G (161/132); new base C (2/21); total (163/156) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.22e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 373 total aligned reads displayed.
CAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGA > CP009273/1702969‑1703103 | cAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCGAAg < 1:10228088/68‑1 (MQ=25) aaaGCGCGCAAGCTGGAACAGCAACAGGCTAATGCTGAACCAGAAGAACAGGTCGATCCGCGCAATgc < 1:9736350/68‑1 (MQ=255) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTAGATCCGCGCAAAgca > 1:14439663/1‑66 (MQ=11) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc > 1:12525724/1‑67 (MQ=35) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcc > 1:5938894/1‑67 (MQ=35) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgca > 1:30066359/1‑66 (MQ=25) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcg > 1:29584180/1‑66 (MQ=255) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcg > 1:4552634/1‑66 (MQ=255) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcg > 1:17242331/1‑66 (MQ=255) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcc > 1:37201887/1‑67 (MQ=25) gcgcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgccg > 1:16089756/1‑67 (MQ=25) gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgcc < 1:30462053/67‑1 (MQ=35) gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgcc < 1:23812715/67‑1 (MQ=35) gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgcc < 1:20936274/67‑1 (MQ=35) gcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgccgc < 1:23525465/66‑1 (MQ=35) gcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGt < 1:20013958/67‑1 (MQ=35) aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGaa < 1:35741746/68‑1 (MQ=35) aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGaa > 1:2437166/1‑68 (MQ=35) gCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGaa > 1:11104545/1‑67 (MQ=35) gCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCCGTAGac > 1:8562465/1‑66 (MQ=11) cTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg > 1:26866222/1‑67 (MQ=35) tGGTACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 1:25516412/66‑1 (MQ=25) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 1:9046598/66‑1 (MQ=35) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:33811525/68‑1 (MQ=35) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:23347613/68‑1 (MQ=35) tGGAACAGCAACAGGCAAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:5648011/68‑1 (MQ=25) aaCAGCAACAGGCTAATGCGGAACCAGAAGACCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:36946939/67‑1 (MQ=25) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGc < 1:7843638/67‑1 (MQ=25) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:28045591/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:15692121/67‑1 (MQ=255) aCAGCAACAGGCTAATGCGGAGCCAGAAGACAAGCTCTATCCGCCCAAACCCCCCCACCAAGCCgaaa > 1:13891038/1‑65 (MQ=2) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCCGCCGTAGACGCGGCTa > 1:9269710/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTa > 1:21317327/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:11472241/67‑1 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:17482012/67‑1 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCGGCTa > 1:13200078/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCGGCTa > 1:24823312/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTa > 1:36429161/1‑68 (MQ=11) cAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTAt > 1:37857667/1‑68 (MQ=255) aaCAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTAGACGCGGCTATTGc > 1:32030742/1‑67 (MQ=11) aGGCTAATGCGGAACCAGAAGAACAGTTATATACGCGAAAAGCAGCCGTCGAAGCAGCTATTGCACga > 1:19655295/1‑67 (MQ=2) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgag > 1:10341306/1‑65 (MQ=25) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgag > 1:31663309/1‑65 (MQ=25) gCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGACGCCGCTATTGCCCgcgc > 1:26269574/1‑68 (MQ=11) gCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCgag > 1:25982407/1‑65 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:36015228/65‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:28759428/65‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:22503/66‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGcc > 1:8202595/1‑68 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGCCGCCGCTATTGCCCgcgc > 1:33061249/1‑67 (MQ=11) cTAAAGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:34217195/66‑1 (MQ=25) aaTGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCaa < 1:29884647/68‑1 (MQ=35) gCGGAACCTGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGGGCCCAAg > 1:10696174/1‑67 (MQ=11) gCGGAACCGGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCGGCTATTGCCCGAGCCAAAGc > 1:7338199/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTGGAAGCGGCTATTGCCCGAGCGCAAGc > 1:33588552/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGc > 1:31438096/1‑68 (MQ=35) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGc < 1:17954243/68‑1 (MQ=35) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCaacg > 1:4629364/1‑65 (MQ=255) gCGGAACCAGAAGAACACGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCTTCCCAAAg > 1:9906377/1‑67 (MQ=11) cGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGc > 1:38370522/1‑67 (MQ=25) cAGAATAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:2609057/68‑1 (MQ=255) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:1691056/68‑1 (MQ=40) aagaaCAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCCCAAGCACGCAAGcgc > 1:25757881/1‑66 (MQ=14) aagaaCAGGTAGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTg > 1:13362048/1‑68 (MQ=255) ataaCAGGTCGATCCGCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCt < 1:37509239/64‑1 (MQ=255) caaCTGGTCGATCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:30928524/67‑1 (MQ=11) aagaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 1:11705628/65‑1 (MQ=25) aaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 1:27382797/68‑1 (MQ=35) aCAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGGGCGAAAGCACGAAAGCAGGacc > 1:34582748/1‑66 (MQ=11) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGTGCCAAAGCACGCAAGCTggcgc > 1:19231665/1‑65 (MQ=255) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAAc > 1:13016038/1‑68 (MQ=35) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAAc > 1:11604897/1‑68 (MQ=35) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGacc > 1:4122269/1‑66 (MQ=255) tgccGATCCTCGAAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc < 1:33282118/65‑1 (MQ=11) gctgATCCACGAAAACCAGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:27575257/65‑1 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:34017754/1‑67 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:6278660/1‑67 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGACCAGCa > 1:28405782/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:15474381/1‑67 (MQ=25) gcGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:6652042/66‑1 (MQ=25) gcGAGCCTCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc < 1:1632118/65‑1 (MQ=11) tCCTCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:1462452/68‑1 (MQ=11) tCCGCGCAACGCCGCCGGAGAAGCCGCTATTCCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:20281688/68‑1 (MQ=11) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:18755897/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:2168744/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:38799339/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:17754362/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:524919/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:34894987/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:32395806/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAgg > 1:24910254/1‑68 (MQ=25) tCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:10127244/68‑1 (MQ=255) tCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:10876303/68‑1 (MQ=11) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:356302/1‑66 (MQ=35) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:35285654/1‑66 (MQ=35) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:22910587/1‑68 (MQ=35) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAACGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:32746665/1‑68 (MQ=255) cAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:16571877/1‑67 (MQ=35) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:27271518/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCGAATGCCGa > 1:29344768/1‑68 (MQ=255) | CAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGA > CP009273/1702969‑1703103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |