| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,251 | A→C | 5.3% | A692A (GCA→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,251 | 0 | A | C | 5.3% | 1484.8 / 10.8 | 546 | A692A (GCA→GCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base A (202/306); new base C (7/30); total (209/337) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.34e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 560 total aligned reads displayed.
ACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGC > CP009273/1703185‑1703318 | cGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgc > 1:8183118/1‑68 (MQ=255) ggCAAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:21466776/68‑1 (MQ=255) cTAATGCGGATCCAGAACAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:5520025/66‑1 (MQ=255) cTAATGCGGAGGCAGAATAACGGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgc < 1:11696669/65‑1 (MQ=18) cTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:24859901/66‑1 (MQ=255) cTAATGCGGACCCAGAACAACTTGTTGATCCTCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:2931516/66‑1 (MQ=255) cTAATCCGGAGCCAGAAGAACAGGCTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:15364720/66‑1 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCCGCGGCTATTGCACGCGCCAAAg > 1:32595630/1‑67 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAg < 1:31026241/67‑1 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:1919682/1‑68 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:24105053/1‑68 (MQ=255) gCGGACCCACAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc < 1:34275103/68‑1 (MQ=255) cGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:25404214/1‑67 (MQ=255) aGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg < 1:9058678/67‑1 (MQ=255) cccAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGc < 1:10726768/66‑1 (MQ=255) ccAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCaa > 1:5284563/1‑68 (MQ=255) cAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:4238693/68‑1 (MQ=255) cAGAACAACTTGGTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:18270311/68‑1 (MQ=17) tcaaCAGGTTGATCCTCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCt < 1:17899839/64‑1 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCt < 1:35296748/66‑1 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:19685405/1‑68 (MQ=255) agaaCAGGTAGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTg < 1:28169985/67‑1 (MQ=255) gaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCTAAGCACGCAAGCTGGa > 1:9493226/1‑68 (MQ=255) gaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa > 1:21266563/1‑68 (MQ=255) cgaCAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa < 1:27484838/66‑1 (MQ=255) caaCAGGTTGATCCGCGCAAACCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa < 1:37997212/67‑1 (MQ=255) aCAGGTTGATCCGCGCAAAGCTGCCGGCGAAGCGGCTATTGCACGCGCCATAGCACGCAAGCTGGAAc > 1:24601669/1‑68 (MQ=18) aCAGGCTGATCCCCGCAAACCTGCCGTCGAAGCGGCTATCGCACGCGCCAAAGCACGCAAGCTGGAAc < 1:8462094/68‑1 (MQ=17) aGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACa > 1:34512396/1‑67 (MQ=255) aGGTTGATCCGCGCAAAGCTGCAGTCGCAGCCGCTATTGCCCGCGCGAAAGCACGAAAGGGGGAACa > 1:10018261/1‑67 (MQ=11) tgctGATCCTCGCAAACCTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGc < 1:21871276/65‑1 (MQ=14) gTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACTCAAGCTGGAACAGc > 1:37157915/1‑67 (MQ=255) gTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa < 1:14737334/68‑1 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGc < 1:13312682/66‑1 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:18696162/1‑67 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:26777945/1‑67 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:22781486/1‑67 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:32108603/1‑67 (MQ=255) tcgATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGc < 1:29549742/64‑1 (MQ=255) gtGATCCTCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGc < 1:25593711/65‑1 (MQ=255) ctGATCCTCGCAAATCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa < 1:30532287/66‑1 (MQ=17) ctGATCCGCGCAAAGCTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa < 1:5945452/66‑1 (MQ=255) ctGATCCGCGAAAACCTGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGc < 1:20569408/65‑1 (MQ=11) aTCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:13784372/1‑68 (MQ=255) aTCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:34701824/1‑68 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:23963870/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:459665/1‑67 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:6328549/1‑67 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:674770/1‑67 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:36159325/1‑67 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:1145486/68‑1 (MQ=255) ccGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:13612664/1‑66 (MQ=255) gcAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:35730529/1‑68 (MQ=255) gcAAAGCTGCCGGCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt < 1:28700434/68‑1 (MQ=255) gcAAACCTGCCGTAGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt < 1:16678559/68‑1 (MQ=14) aaaGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:20788461/67‑1 (MQ=255) aGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCgg < 1:9456387/68‑1 (MQ=255) tcTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:23743547/67‑1 (MQ=255) gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:7831352/1‑68 (MQ=255) cTGCCGTCGAAGCTGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:26054449/68‑1 (MQ=255) cTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:10448175/68‑1 (MQ=255) cTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:35959969/68‑1 (MQ=255) cTGCCGTAGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:15202588/68‑1 (MQ=255) tGCCTTCGTAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:33043410/67‑1 (MQ=255) tGCCGTTGAAGCCGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:3162387/67‑1 (MQ=14) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt < 1:11983813/66‑1 (MQ=255) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:14520816/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:11031824/67‑1 (MQ=255) cGTCGAAGCGGCTATAGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:3030115/67‑1 (MQ=255) cGTCGAAGCAGCTATAGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:21001159/67‑1 (MQ=11) gAAGCTGCTATTGCCCGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:37521663/68‑1 (MQ=11) gAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:7392450/68‑1 (MQ=255) gAAGCAGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:14943895/68‑1 (MQ=255) acaggCTATTGCACGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAAc < 1:14186463/65‑1 (MQ=11) aGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAgaagaa < 1:12279421/67‑1 (MQ=255) cGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg > 1:4897091/1‑68 (MQ=255) cGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg > 1:17623275/1‑68 (MQ=255) cGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg > 1:28603081/1‑68 (MQ=255) tgCTATTGCCCGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:2979451/66‑1 (MQ=11) tgCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:36653298/66‑1 (MQ=255) tgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:32289604/66‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCTCTGATGCTGTAACAGCAAAAGGCTAATGCGGTACCAGAAGAACAg < 1:24362016/67‑1 (MQ=17) ggCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:31213181/67‑1 (MQ=255) ggCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:12638708/67‑1 (MQ=255) cgCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAg < 1:15986914/66‑1 (MQ=255) cTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGtt > 1:6904409/1‑68 (MQ=255) tATTGCACGCGCCAAAGCACGAAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTg > 1:26442151/1‑68 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:20117493/1‑67 (MQ=255) tGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGAt > 1:15780645/1‑67 (MQ=255) cACGCGCCATAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:38989412/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:27245824/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:22490315/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:27032280/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:28836465/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:25127086/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:2791985/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:17220531/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:36449344/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:38570428/1‑67 (MQ=255) cACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATcc > 1:33365719/1‑67 (MQ=255) | ACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGC > CP009273/1703185‑1703318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |