| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,315 | T→A | 11.8% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,315 | 0 | T | A | 11.8% | 943.9 / 28.3 | 396 | intergenic (+354/+260) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base T (184/156); new base A (35/18); total (221/175) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 404 total aligned reads displayed.
CCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGG > CP009273/3263248‑3263382 | ccGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGT < 1:21783158‑M1/68‑1 (MQ=255)ccGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGT < 1:7124943‑M1/68‑1 (MQ=255)ccGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGT < 1:15563103‑M1/68‑1 (MQ=255) gCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAAC > 1:38962413‑M1/1‑67 (MQ=255) cGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCG < 1:18874499‑M1/68‑1 (MQ=255) ttctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGa < 1:7744542/68‑1 (MQ=35) tttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCGGCCCCTCCAAAAGAAAAAACCCGCCGAAgcg < 1:32535211‑M2/68‑4 (MQ=255) ttGGGTATAGTGTCTTTGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgg > 1:36336843‑M2/1‑64 (MQ=255) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcggg > 1:8556685‑M2/1‑63 (MQ=255) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAACACCCGCCGAAgcgggt > 1:2977949‑M2/1‑62 (MQ=255) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgggt > 1:25509811‑M2/1‑62 (MQ=255) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgggt < 1:27155587‑M2/68‑7 (MQ=255) ggTATAGTGTCGTGGACAGTCATTCATCTTTGTGCCCCTACAAAACAAAAAACCCGCCGAAgcgggtt < 1:16692554‑M2/68‑8 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgggttt < 1:36540530‑M2/68‑9 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgggttt < 1:13773792‑M2/68‑9 (MQ=255) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAgcgggttttt < 1:24640556‑M2/68‑11 (MQ=255) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAgcgggttttt < 1:15974087‑M2/68‑11 (MQ=255) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgggtttttac > 1:37917368‑M2/1‑56 (MQ=255) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgggtttttac > 1:38623069‑M2/1‑56 (MQ=255) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgggtttttac < 1:4427188‑M2/68‑13 (MQ=255) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgggtttttac > 1:5142246‑M2/1‑56 (MQ=255) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAgcgggtttttac > 1:9591503‑M2/1‑56 (MQ=255) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACg > 1:30758216/1‑68 (MQ=35) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGGTTTTACg > 1:10125892/1‑68 (MQ=25) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCGCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACg > 1:23159900/1‑68 (MQ=25) gtgtCGTGGACAGTCATTCATCTTTCAGCCCCTCCAAAAAAAAAAACCCGCCGAAgcggggttttaag < 1:33519458‑M2/68‑14 (MQ=255) tgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGt > 1:14984572/1‑68 (MQ=35) gtCGTGGACAGTCATTCATCTTTCTGACCCAACAAAAGTAAAAACCCGCCGCAGCGGCGTTTTAAGTa > 1:22681853/1‑68 (MQ=11) gtCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa > 1:10575967/1‑68 (MQ=255) gtCCTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa > 1:2103157/1‑68 (MQ=25) cGTGGTCAGAGATTCTTCTTTCTGCCCGTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:28250093/68‑1 (MQ=11) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:31425714/68‑1 (MQ=35) cGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 1:17679075/68‑1 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa < 1:22957343/68‑1 (MQ=40) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa > 1:6137760/1‑68 (MQ=40) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACa > 1:33898735/1‑68 (MQ=25) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGGTTTTACGTAAAACa > 1:14860695/1‑68 (MQ=255) ggACAGTCATTCATCTTTCTGCCCATCCAAAAGTAAAAACCCGCCGCAGCGCGTTGTTACGTaaatcc > 1:32320816/1‑65 (MQ=11) aCAGTCATTCATCTTTCTGTAAATCCAAAAGAAAAAACCAGCCGAAAACTCATTTTACGTAAAACAgg > 1:27958341/1‑68 (MQ=2) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:25186082/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:25328292/1‑68 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:14003414/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:37661175/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:5623276/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:12850822/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:12555861/67‑1 (MQ=40) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAgg > 1:14325086/1‑68 (MQ=255) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCCGGTTTTTCCGTAAAACAgg > 1:23965689/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCAGCCGAAGCCGGTTTTTACGTAAAACAgg > 1:37150970/1‑68 (MQ=11) aCAGTCATTCATCTTTCTGCCCCTCCAAAACAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg > 1:35762823/1‑68 (MQ=255) aCAGTCATTCATCTTTCTGCCCCACAAAAAGTAAAAAACCGCCGAACCGGCTTTTTACGTAAAAGAgg > 1:4938940/1‑68 (MQ=14) aCAGTCATTCATCTCTCTGCCCCTCCAAAAGTAAACACCCGCCGCAGCGGGTTTTTACGTAAAACAg < 1:6826242/67‑1 (MQ=14) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg < 1:28331275/63‑1 (MQ=255) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAgg < 1:19287342/63‑1 (MQ=255) cattcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGa < 1:36702006/66‑1 (MQ=255) attcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAc < 1:35315617/68‑1 (MQ=255) attcatCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAAc < 1:19695756/68‑1 (MQ=255) attcatCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa > 1:8871069/1‑66 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGt > 1:11899966/1‑59 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTgc > 1:26682733/1‑66 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:24234262/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:34253553/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:32846758/1‑67 (MQ=255) atCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGa > 1:29177671/1‑67 (MQ=255) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc < 1:11266559/68‑1 (MQ=255) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc < 1:33161958/68‑1 (MQ=255) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc < 1:17368610/68‑1 (MQ=255) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc > 1:34526981/1‑68 (MQ=40) tCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAcc > 1:6280867/1‑68 (MQ=40) tttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGa > 1:28649022/1‑68 (MQ=255) ttCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGAt > 1:9123435/1‑68 (MQ=40) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:31001960/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg > 1:18172831/1‑67 (MQ=255) gCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACAGATacg > 1:18653805/1‑65 (MQ=255) cccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGca > 1:16241106/1‑66 (MQ=255) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:4404673/68‑1 (MQ=255) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:13544067/68‑1 (MQ=255) ccTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:11409349/68‑1 (MQ=255) ccTCAAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGc < 1:31885711/68‑1 (MQ=255) cAAAAGTACAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttc < 1:25949249/68‑1 (MQ=255) cAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttc < 1:33428165/68‑1 (MQ=255) aaaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttc < 1:7464067/67‑1 (MQ=255) aaaaTTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:9294528/68‑1 (MQ=255) aaaaTTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:11637613/68‑1 (MQ=255) aaaaGTATAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTTAAACTGACCGATAAGCCGctttct < 1:24098459/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:15039510/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:12232423/68‑1 (MQ=255) aaaaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttct < 1:20226931/68‑1 (MQ=255) aattAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:35478252/65‑1 (MQ=255) aaGTAAAAACCCGCCGAATCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:22208253/68‑1 (MQ=255) aaGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:26186148/68‑1 (MQ=40) aaGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:16921545/68‑1 (MQ=25) cttaaAAACCCGCttcggcgggtttttacttttggaggggcagaaagatgaatgactgtccacgacac < 1:21515216‑M1/66‑56 (MQ=255) aGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCtttt > 1:17069101/1‑68 (MQ=40) gTAAAAACCCGCttcggcgggtttttacttttggaggggcagaaagatgaatgactgtccacgacact > 1:13223964‑M1/1‑12 (MQ=255) gTAAAAACCCGCttcggcgggtttttacttttggaggggcagaaagatgaatgactgtccacgacact > 1:30038569‑M1/1‑12 (MQ=255) gTAAAAACCCGCttcggcgggtttttacttttggaggggcagaaagatgaatgactgtccacgacact > 1:8133066‑M1/1‑12 (MQ=255) gTAAAAACCCGCttcggcgggtttttacttttggaggggcagaaagatgaatgactgtccacgacact > 1:23364593‑M1/1‑12 (MQ=255) gTAAAAACCCGCttcggcgggtttttacttttggaggggcagaaagatgaatgactgtccacgacact > 1:23093351‑M1/1‑12 (MQ=255) tAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGCCCGATAAGCCGCTTTCTTTTgg > 1:23690008/1‑68 (MQ=255) | CCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGG > CP009273/3263248‑3263382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |