| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,441 | A→C | 7.0% | intergenic (+480/+134) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,441 | 0 | A | C | 7.0% | 962.7 / 7.1 | 382 | intergenic (+480/+134) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base A (172/152); new base C (10/16); total (182/200) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 385 total aligned reads displayed.
TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGT > CP009273/3263374‑3263507 | ttttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAgc > 1:27874378‑M2/1‑66 (MQ=255) tGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAgcggg > 1:9162656‑M2/1‑63 (MQ=255) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAATTGCAAAAACCCGCCGAAgcgggt > 1:29571105‑M2/1‑62 (MQ=255) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAgcgggt > 1:6351796‑M2/1‑62 (MQ=255) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAgcgggt > 1:35613336‑M2/1‑62 (MQ=255) gggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAgcgggt > 1:32704948‑M2/1‑62 (MQ=255) gTATAGTGTCGTGGACAGTCATTCCTCTTTCTGCCCCTCCAAACGCAAAAACCCGCCGAAtcggggtt < 1:33597542‑M2/68‑9 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCGCCTCCAAAATCAAAAACCCCCCGAAgcggggtt < 1:10296410‑M2/68‑9 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAgcgggttt < 1:9728273‑M2/68‑9 (MQ=255) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAgcgggtt > 1:20647392‑M2/1‑60 (MQ=255) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAgcgggttttt < 1:15535778‑M2/68‑11 (MQ=255) taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa < 1:23072971/68‑1 (MQ=35) taGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa < 1:23521773/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:16148131/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:24971358/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:3042066/68‑1 (MQ=35) aGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAc < 1:37768798/68‑1 (MQ=35) gtgtCGTGGACAGTCATTCATCTTTGGGCCCCTCCAAAAGCAAAAACCCGCCGACGAGGGGTTTTaag > 1:29030569/1‑66 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg > 1:10113938/1‑68 (MQ=33) gtgtCGTGGACAGTCATTCATCTTTCTGCCCCTACAAAAGCAAAAACCCGCCGCAGCCGGTTTTTaag > 1:35434942/1‑66 (MQ=11) gtgtCGTGGACAGTCATTCATCTTTCTGCCCATCCAAAAGCAAAAACCCCCCGAAGCGGGTTTTTACg > 1:22191757/1‑68 (MQ=255) tgtCGTGGACAGTCATTCATCTTTGTGCCCCTACCAAAGCAAAAACCCGCCGCAGCGGGGTTTTACGt > 1:12332923/1‑68 (MQ=11) tgtCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGt > 1:16509622/1‑68 (MQ=31) tgtCGTGGACAGTCATTCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGCAGCCGGGTTTTACGt > 1:28019990/1‑68 (MQ=11) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:31097216/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:19563521/1‑68 (MQ=35) ggACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCa > 1:33995077/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGACGCGGGTTTTTACGTAAACCAgg > 1:11446817/1‑68 (MQ=25) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:10671031/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:22563509/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAgg > 1:11763244/1‑68 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:21439918/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:32326484/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:1275995/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:21577394/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:3652041/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:18426760/67‑1 (MQ=35) aCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:18155040/67‑1 (MQ=35) aCAGTCATTCATCTTTCAGCCCCTCCAAAAGAAAAAACAATCCGAAGCGGGTTTTTACGTAAACCAgg > 1:17433002/1‑68 (MQ=11) aCAGTCATTCATCTTACTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:18932033/67‑1 (MQ=25) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGt < 1:8807636/64‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGaa < 1:25776581/67‑1 (MQ=35) attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAAc < 1:13320490/68‑1 (MQ=35) attcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAAc < 1:29216654/68‑1 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg > 1:7127331/1‑68 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTg > 1:14999193/1‑68 (MQ=35) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa < 1:10008318/68‑1 (MQ=35) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa < 1:18523254/68‑1 (MQ=35) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa < 1:21735059/68‑1 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAACCCCCCCGAAgcgggtttttgcttttggaggggcagaaagat > 1:6667914‑M2/1‑36 (MQ=255) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:1517929/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:30342532/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:748227/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:27675721/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGa > 1:26489782/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAc < 1:29949194/68‑1 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAAGTAAACCAGGTGAAACTGa > 1:27319416/1‑67 (MQ=25) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc < 1:23873088/68‑1 (MQ=35) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAcc > 1:13117098/1‑68 (MQ=35) tGCCCCTCCAAAAGC‑AAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:16947188/1‑67 (MQ=255) tGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATaa > 1:7351920/1‑67 (MQ=25) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:3884023/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:4126513/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:25657509/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg > 1:28338730/1‑67 (MQ=35) gCCACTCAAAAAGCTTAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGc < 1:16257378/68‑1 (MQ=11) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGcc > 1:24552403/1‑67 (MQ=35) ccTCCAAAAGCAAAAACCCGCCGAAGCGGTTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGc < 1:25408937/68‑1 (MQ=255) aaaaTCACAAACCCGCCGAACCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttct < 1:26225881/68‑1 (MQ=14) aaaaGCATAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGctttct < 1:2012533/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:14350141/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:15691508/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:31542025/68‑1 (MQ=255) aaaaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttct < 1:38155778/68‑1 (MQ=255) aaGCACAAACCCGCCGTACCGGGTTATTACGTAAATCAGGTCAAACTGACCGATAAGCCGctttcttt < 1:39012844/68‑1 (MQ=11) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttcttt < 1:8590837/68‑1 (MQ=40) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGctttcttt < 1:14819360/68‑1 (MQ=40) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGGGAAACTGACCGATAAGCCGCTTTCtttt > 1:13905690/1‑68 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:23906142/1‑68 (MQ=39) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:8320134/1‑68 (MQ=39) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:30668979/1‑68 (MQ=39) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg > 1:6483311/1‑68 (MQ=39) cataaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:31923675/65‑1 (MQ=255) cAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg > 1:33260578/1‑68 (MQ=37) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:7900502/67‑1 (MQ=35) aaaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:369673/67‑1 (MQ=35) taaaCCCGCCGGATCGGGTTATTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:37988235/67‑1 (MQ=11) caaaCCCGCCGTATCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:9424409/67‑1 (MQ=11) caaaCCCGCCGGATCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:5915524/67‑1 (MQ=11) aaaaCCCGCCGTACCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:24318330/68‑1 (MQ=11) aaaaCCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:17924213/68‑1 (MQ=35) aaCCCGCCGTATCGGTTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGt < 1:5496820/66‑1 (MQ=11) aaCCCGCCGCACCGGGTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTggg < 1:19738967/65‑1 (MQ=11) cccGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtata > 1:34605827/1‑67 (MQ=35) gccgTATCGGTTTTTTAGGTAAATCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATTGcgt < 1:34981753/68‑1 (MQ=11) gccgTACCGGTTTTTTACGTAAAGCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:4587530/68‑1 (MQ=11) gccgGATCGGTTTTTTACGTAAACCAGGTTAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:37465062/68‑1 (MQ=14) gccgAAGCGGGTTTTTACGTATACCTGGTGATTATGACCGATAATCCGCTTTCTTTTGGGTATAGcgt < 1:21121119/68‑1 (MQ=14) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:29349324/68‑1 (MQ=40) gccgAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGcgt < 1:1214108/68‑1 (MQ=40) | TTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGT > CP009273/3263374‑3263507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |