| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,774,505 | C→G | 5.7% | intergenic (+128/‑70) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,774,505 | 0 | C | G | 5.7% | 2289.5 / 18.6 | 658 | intergenic (+128/‑70) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (529/79); new base G (2/47); total (532/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-35 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 682 total aligned reads displayed.
ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGC > CP009273/3774438‑3774571 | atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc > 1:33965641/1‑68 (MQ=255)atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc > 1:25537179/1‑68 (MQ=255)atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc > 1:8109165/1‑68 (MQ=255) gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgg < 1:13446101/68‑1 (MQ=255) taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg > 1:23099923/1‑68 (MQ=255) taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg > 1:36699000/1‑68 (MQ=255) taCTCCCTCACTCTGAAACGACACCGCACTCTCTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg > 1:1002291/1‑68 (MQ=255) aCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg < 1:22113809/68‑1 (MQ=255) aCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg < 1:35332082/67‑1 (MQ=255) aCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg < 1:2421921/67‑1 (MQ=255) cTCCCTCACTCTGAAACGCCACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggga > 1:4550965/1‑67 (MQ=255) cTCCCTCACTCTGAAACGACCCCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:7420120/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggggg > 1:5287226/1‑67 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggggg > 1:33357185/1‑67 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:3479233/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:1945653/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:21462745/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:24411492/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:3277909/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:23571276/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:35896833/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:25098523/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:30078659/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:26429274/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:26894446/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:27553709/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:28355218/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:38245723/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:7702275/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:6383349/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:1293258/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:13963928/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:14314680/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:38497806/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:19176530/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:1547186/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:16482356/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:9334720/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:10588769/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:1708677/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:37003589/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:36792806/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:1856780/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt > 1:9805448/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTC‑CCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg > 1:16159078/1‑68 (MQ=255) cTCCCTCACTCTGAAACGACACCGCACTC‑‑TTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa > 1:11580383/1‑68 (MQ=37) tCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg > 1:29876258/1‑68 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa > 1:32544907/1‑68 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa > 1:29029506/1‑68 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa < 1:33661303/68‑1 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa > 1:3808077/1‑68 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa > 1:2804489/1‑68 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa > 1:20908519/1‑68 (MQ=255) cccTCACTCTGAAACGACACCGCACTCTTTTTTACTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGa > 1:36291082/1‑68 (MQ=255) tCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAggg > 1:27210293/1‑68 (MQ=255) cACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgggg < 1:23778531/68‑1 (MQ=255) aCTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa > 1:3767779/1‑68 (MQ=255) tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaa > 1:3135200/1‑68 (MQ=255) tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaa > 1:32190308/1‑68 (MQ=255) tctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaa > 1:11982404/1‑68 (MQ=255) aaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 1:1241657/1‑68 (MQ=255) aCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 1:31275187/1‑67 (MQ=255) aCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 1:11030789/1‑67 (MQ=255) aCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 1:903915/1‑67 (MQ=255) gACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGc > 1:20201938/1‑67 (MQ=255) cacCCCACTGTTTTTTTCCCCCCCCCCCCGCCGGGTAGTGGGCCGGGGTGTGGGGAAAAGGCCGCACt < 1:25326850/68‑1 (MQ=255) tttttttCCCCCCCCCCCCGCGGGGGCGGGGGCGGGGGGGCGGGCACAAGGCCGCACTGCTCACCAAt < 1:34414613/68‑1 (MQ=255) tttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 1:10249443/1‑66 (MQ=255) tttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 1:4910923/1‑66 (MQ=255) tgctcCGTCCCCCCTCGGGGTAGTGGGCGGGGGTTGGGGTAAAAGGCCGCACTGCTCACCAATTTTCt < 1:16706760/66‑1 (MQ=255) tctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:5743922/1‑67 (MQ=255) tctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:6711668/1‑67 (MQ=255) tctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt > 1:17402026/1‑67 (MQ=255) ccTCGCCCCTCCGGGGAGAGGGGGGGGGTGCGGGGACAAGGCCGCACTGCTCACCAATTTTCTGCTAt < 1:6926284/68‑1 (MQ=37) ccccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg > 1:1759994/1‑67 (MQ=255) cccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 1:2868504/1‑67 (MQ=255) cccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 1:10808967/1‑67 (MQ=255) cTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc > 1:1522081/1‑67 (MQ=255) tCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc > 1:22363919/1‑68 (MQ=255) cggggggcgggggcgGGGGGGTGGGCACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc < 1:23320753/65‑1 (MQ=255) gggggTGTGGGCGGGGGTGCGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg < 1:1130063/66‑1 (MQ=255) cGGGGTGTGGGCGGGGGTGTGGGTAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc < 1:38918087/68‑1 (MQ=255) cGGGGTGCGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc < 1:35508992/68‑1 (MQ=255) gggAGTGGGCGGGGGTGTGGGTAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa < 1:30792360/67‑1 (MQ=255) gagaGGGCCGGGGTGAGGGGAAAAGGCCGCGCTGCTCACCAATTTTCTGCAATCCTGCCCCCGCACTa > 1:8639708/1‑68 (MQ=39) tgcgggCCGGGGTGCGGGTAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa < 1:18253408/64‑1 (MQ=255) cggggggCGGGGTGTGGGCAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa < 1:14868002/64‑1 (MQ=255) agtgggCGGGGGTTCGGGTAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa < 1:35002125/64‑1 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:13731191/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:6039407/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:20592059/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:4031045/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:30392726/1‑68 (MQ=255) agagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:15704538/1‑68 (MQ=255) gtgggCCGGGGGGCGGGGACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg < 1:8832079/66‑1 (MQ=255) gcgggcgggggggcggggACAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa < 1:22850121/65‑1 (MQ=255) gcgggCCGGGGTGAGGGCAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg < 1:31804898/66‑1 (MQ=255) gagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg > 1:25868289/1‑68 (MQ=255) gagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg > 1:18930212/1‑68 (MQ=255) gCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtttt > 1:29450715/1‑40 (MQ=255) | ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGC > CP009273/3774438‑3774571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |