| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,076,055 | T→G | 5.6% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,076,055 | 0 | T | G | 5.6% | 1247.6 / 9.7 | 523 | Q22P (CAG→CCG) | fdoH | formate dehydrogenase‑O, Fe‑S subunit |
| Reads supporting (aligned to +/- strand): ref base T (174/304); new base G (31/6); total (212/311) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.89e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 524 total aligned reads displayed.
GCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGCCATATG > CP009273/4075989‑4076122 | cAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGgcgc > 1:31962102/1‑68 (MQ=255) cAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGgcg > 1:38904019/1‑67 (MQ=255) aGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGcgcg > 1:27979128/1‑68 (MQ=255) aGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCGGAGGcgcg > 1:21512186/1‑68 (MQ=255) gCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGCgg > 1:6485763/1‑68 (MQ=255) gCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTATTCCTGGAAGTCCCGCGCCGGAGGCGCgg > 1:9463484/1‑68 (MQ=255) cGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCgggg < 1:36300881/68‑1 (MQ=255) cGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCgggg < 1:12605180/68‑1 (MQ=255) cGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCgggg < 1:22355789/68‑1 (MQ=255) cGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCgggg < 1:19396954/68‑1 (MQ=255) cGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCgggg < 1:1517604/68‑1 (MQ=255) cGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTCAGGCGCgggg < 1:14301814/68‑1 (MQ=255) cGATACAGGTGGTAACGTCGAGGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGCgggg < 1:696259/68‑1 (MQ=255) gATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGgcgc < 1:10495332/63‑1 (MQ=255) gATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCggggg < 1:30872409/68‑1 (MQ=255) gATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCggggg < 1:38014727/68‑1 (MQ=255) gATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCggggg < 1:35041748/68‑1 (MQ=255) gATACAGGTGGTAACGTCGAGGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCggggg < 1:27110158/68‑1 (MQ=255) gATACAGGTGGTAACGGCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCgggg < 1:19991856/67‑1 (MQ=255) tACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCgggg < 1:21778331/65‑1 (MQ=255) tACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGt < 1:25513046/67‑1 (MQ=255) cAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGCGGCGCGGGGGTCa > 1:21153854/1‑67 (MQ=255) ggtggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGa > 1:33604372/1‑67 (MQ=255) ggtggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCAGAGGCGCGGGGGTCAGa > 1:15865596/1‑67 (MQ=255) gtggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCCCCTGAGGCGCGGGGGTCAGAcc > 1:17394402/1‑68 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGa < 1:11098498/65‑1 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGa < 1:4006448/65‑1 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGAcc < 1:29673904/67‑1 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGAc < 1:31807661/66‑1 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCg > 1:35532945/1‑68 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCg > 1:28549268/1‑68 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCg > 1:10841841/1‑68 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCg > 1:25584186/1‑68 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGGCAGACCg > 1:7601734/1‑68 (MQ=255) tggtAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCGGCGGCGCGGGGGTCAGAc > 1:34132035/1‑66 (MQ=255) aCGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGt < 1:30040643/68‑1 (MQ=255) aCGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGt < 1:16622561/68‑1 (MQ=255) aCGTCGATGAGTTGCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGt < 1:17857138/68‑1 (MQ=255) cGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTc > 1:22042622/1‑68 (MQ=255) cGTCGAAGAGTTTCGCCACTTCTTCCTGGAAGTGCCGCGGCGGAGGGCCGGGGGGCAGACCGTTatta > 1:4805748/1‑65 (MQ=255) gTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGGCCGTTAGTc > 1:3774995/1‑67 (MQ=255) gTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCCCGCCTGAGGCGCGGGGGTCAGACCGTTAGTc > 1:17116861/1‑67 (MQ=255) tGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCggc > 1:25778844/1‑66 (MQ=255) gAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAac > 1:38172880/1‑68 (MQ=255) aGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAacg > 1:37119736/1‑68 (MQ=255) aGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAac > 1:16304180/1‑67 (MQ=255) aGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGGCAGCCCGTTACTCGCGGaagg > 1:2316250/1‑66 (MQ=255) ttCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAacgac < 1:3324470/67‑1 (MQ=255) ttCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAacgac < 1:5924065/67‑1 (MQ=255) ttCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAacgac < 1:21005744/67‑1 (MQ=255) ttCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAacga < 1:30303061/66‑1 (MQ=255) tCGCCACTTCTTCCTGGACGTCCCGCGCCGGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAAcgacga < 1:5427361/68‑1 (MQ=255) gCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAAt < 1:29305935/68‑1 (MQ=255) gCCACTTCTTCCTGGAAGTCCCGCGCCGGAGGCGCCGGGGTCAGCCCGTTAGTCGCGGAACGACGAAt > 1:8909883/1‑68 (MQ=255) gCCACTTCTTCCTGGAAGTCCCGCCCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGAGGAAt > 1:7244012/1‑68 (MQ=255) cACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGa < 1:19667765/68‑1 (MQ=255) cttcttCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGata < 1:12123901/68‑1 (MQ=255) cttcttCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGata < 1:34562825/68‑1 (MQ=255) ttcttcCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGatat < 1:11562883/68‑1 (MQ=255) tcttcCTGGACGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATc < 1:19879985/68‑1 (MQ=255) tcttcCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATc < 1:931101/68‑1 (MQ=255) tcttcCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATc < 1:36023563/68‑1 (MQ=255) ccTGTATGTCGCGCGGCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTga < 1:8214252/68‑1 (MQ=255) ccTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTga > 1:22647228/1‑68 (MQ=255) ccTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTga < 1:25100793/68‑1 (MQ=255) ccTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTga < 1:22875645/68‑1 (MQ=255) tGGACGGCCCGCGCCTGAGGCGCGGGGGTCAGACCGGTAGTCGCGGAACGACGAATGATATCTTgaga < 1:1297973/68‑1 (MQ=255) gAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGAtt > 1:28973066/1‑68 (MQ=255) gAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATATTGAGAtt > 1:13474005/1‑68 (MQ=255) aaGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGAtt < 1:31426162/67‑1 (MQ=255) aaGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGAtt < 1:24384713/67‑1 (MQ=255) aGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTg < 1:10043551/67‑1 (MQ=255) aGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTg < 1:24673176/67‑1 (MQ=255) aGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTg < 1:15410122/67‑1 (MQ=255) aGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGa < 1:4233478/68‑1 (MQ=255) aGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCCCGGTACGACGAATGATATCTTGAGATTg < 1:8498579/67‑1 (MQ=255) ccGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAg < 1:17557119/68‑1 (MQ=255) ccGCGCCTGAGGCGCGGGGGTCAGACCGTTAGGCGCGGAACGACGAATGATATCTTGAGATTGATAAg < 1:18529231/68‑1 (MQ=255) cgcgCCTGAGGCGCGGTGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:35371330/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:23394972/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:23645761/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:24068268/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:7880577/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:26392582/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:10618903/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:20566547/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:5012859/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:1182808/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:32542960/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:32798523/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:19151314/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:18937010/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:35826358/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGGCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:13906369/68‑1 (MQ=255) cgcgCCTGAGGCGCGGGGGGCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGc < 1:25993614/68‑1 (MQ=255) gcgcCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGcc < 1:35251874/68‑1 (MQ=255) ccTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGCCcta > 1:32353175/1‑68 (MQ=255) ccTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGCCata > 1:18237390/1‑68 (MQ=255) cTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGCCatat > 1:33905632/1‑68 (MQ=255) tGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGCCATATg < 1:36959705/68‑1 (MQ=255) | GCTTTACAGCCGATACAGGTGGTAACGTCGATGAGTTTCGCCACTTCTTCCTGGAAGTCCCGCGCCTGAGGCGCGGGGGTCAGACCGTTAGTCGCGGAACGACGAATGATATCTTGAGATTGATAAGCCATATG > CP009273/4075989‑4076122 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |