| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 964816 = | 129 (0.370) | 10 (0.030) | 7/94 | NT | 7.4% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 143 (0.480) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964888‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC > CP009273/964858‑964922 TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACG < 1:23829907/66‑1 GAAGATTACGCGCTTCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:5246844/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:25458364/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:11953620/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:12375416/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT > 1:21878747/1‑67 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:17449168/67‑1 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC < 1:11431704/68‑1 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGC < 1:28544451/67‑1 GATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC > 1:8813927/1‑67 GATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC > 1:15298064/1‑67 ATTACGCGCATCAGCAAGGGCGAGGTGCGGCAGGGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:6509498/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:15740045/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:11424643/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:18567620/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:6244573/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:6215190/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:5867832/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:21837218/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:7847147/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:21980922/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:22067653/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:4715904/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:4008547/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:25415203/1‑68 TTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:17627934/68‑1 TTACGCGCATCAGAAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:3248604/68‑1 ACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACC < 1:13392614/68‑1 ACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACC < 1:17633676/68‑1 GCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTC < 1:22841119/68‑1 GCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:178868/67‑1 agCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCC < 1:6251616/65‑1 ATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCC < 1:6824023/67‑1 CAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGACCGCTGCCGCACCTCTCCCTT < 1:23340089/68‑1 CAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:10964454/68‑1 agtGGTGCGGCAGCGACATTCATGACTCCATCATTCGACCGCTCCCGCACCTCTCCCTTGCTGATGCG < 1:11189848/65‑1 GAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCG < 1:20100929/67‑1 CGGCAGCGACATTCATGACACCATCAATCGACCGCTGCCGCACCGCGCCCTTGCTGATGCGCGTAAT < 1:25043561/67‑1 CATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGC < 1:21242147/68‑1 GCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAA > 1:19237362/1‑67 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:27207560/67‑1 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:7627061/67‑1 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:14970777/67‑1 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:25639433/67‑1 GCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCC < 1:20463000/68‑1 GCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCC < 1:8124914/68‑1 CGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC < 1:33217/68‑1 TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964888‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC > CP009273/964858‑964922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |