| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2680401 | NA (NA) | 8 (0.030) | 3/90 | NT | NA | noncoding (8/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2680405 | NA (NA) | noncoding (12/20 nt) | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 108 total aligned reads displayed.
TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2680324‑2680401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccggatgTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < CP009273/2680405‑2680341 TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTATTTTGATG > 1:20286056/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:15894595/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:2224086/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:21570314/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:23842877/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:19463888/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:19292463/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:17220858/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:25482849/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:27708912/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:15510524/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:14839840/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:4433414/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:13713645/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:5049494/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:11276347/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:11668869/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:12063802/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:9394164/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:11808945/1‑68TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCAGCATAAGGTGCTGTAATTTGATG > 1:19540511/1‑68TCTGGGCGTGAAGCAGGAAAACAGTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:16715433/1‑68TCTGGGCGGGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATG > 1:17220847/1‑68 CTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGT > 1:17939718/1‑68 CTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGT < 1:451337/68‑1 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:14554563/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:27497580/1‑68 TGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTT > 1:15560715/1‑68 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:4384515/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:957348/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:14953995/1‑67 GGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTG > 1:18878994/1‑67 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:2435957/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:6193665/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:15928081/1‑68 GCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC > 1:22823127/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:29170204/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:9476701/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:22289457/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:20741968/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:2050129/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:11145300/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:20000239/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:24268079/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:8442787/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:24928844/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCG > 1:8962583/1‑68 CGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCC < 1:15514633/67‑1 ggGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:20384667/66‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGCTGTTGCCGG < 1:21982823/68‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:5554047/68‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:9691891/68‑1 GTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGG < 1:18704735/68‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:10698936/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:11704760/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:23664453/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:6184027/67‑1 GAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGA < 1:25488071/67‑1 AAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG > 1:19983589/1‑68 AGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATGT < 1:12115650/68‑1 AGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG < 1:1171307/67‑1 GGTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTCCAGCACGTTATGCGGG > 1:26744218/1‑67 GGTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGG > 1:27655922/1‑67 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:5910327/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:23592022/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCC > 1:17126251/1‑68 GTGCTGTAATTTGATGTTGCCGGATGTTTCCATACGGCAACATCAAATTACAGCACGTTATGCGGGCg > 1:8460549/1‑67 TTTGATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTC > 1:22488352/1‑68 GATGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCTCCTTATGCGGGCCAAAGCATTCGTA > 1:8021498/1‑68 TGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAAT > 1:11977047/1‑68 TGTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAAT > 1:13609091/1‑68 ggTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAA < 1:22484034/64‑1 GTTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATG > 1:28990046/1‑68 TTGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATG < 1:15815178/67‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAA < 1:29248641/68‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAA < 1:6840333/68‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGA < 1:22306278/67‑1 TGCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGA < 1:3034807/67‑1 ggCGGATGTTTCGATGCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:21474088/66‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:14600055/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:502267/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:3215922/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:15027132/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:19979784/68‑1 GCCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:7632368/68‑1 CCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:9228935/67‑1 CCGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAAT < 1:7295057/67‑1 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT < 1:901918/68‑1 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:22294856/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:13949547/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT > 1:18573036/1‑68 CGGATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGT < 1:20311835/68‑1 GATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGGCAAAGCATTCGTAATGAATGTTT > 1:7045800/1‑68 GATGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTATTGAATGTgt > 1:22512448/1‑66 TGTTTCGATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAACCATACGTAATGAATGTTTT < 1:3424595/67‑1 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:13101268/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:16466513/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:10968260/1‑67 TGTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < 1:10886228/67‑1 GTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT > 1:11992927/1‑66 TCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2680324‑2680401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgccggatgTTTCCATCCGGCAACATCAAATTACAGCACCTTATGCGGGCCAAAGCATTCGTAATGAATGTTTT < CP009273/2680405‑2680341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |