BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3375198 =	324 (0.920)	16 (0.050)	6/94	NT	6.0%	coding (1097/1368 nt)	degQ	serine endoprotease, periplasmic
*	?	CP009273	3375228 =	227 (0.770)	16 (0.050)	6/94	NT	6.0%	coding (1127/1368 nt)	degQ	serine endoprotease, periplasmic

Only 100 of 110 total aligned reads displayed.

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGT  >  CP009273/3375228‑3375294

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:8678065/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:14228773/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:8239744/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:3323822/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:15398209/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:13377437/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                             >  1:4042537/1‑68

 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                            >  1:16228116/1‑68

 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                            >  1:27673380/1‑68

 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                            >  1:24066202/1‑68

 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                            >  1:10028245/1‑68

  ttaGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAG                                                                           <  1:22186085/65‑1

  TTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAG                                                                           <  1:6254307/68‑1

  TTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                            >  1:4237993/1‑67

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:3832656/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:23545122/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:23116106/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:22617057/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:24245944/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:20642609/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:19407651/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:2729525/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:28348052/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:22707932/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:424704/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:5075444/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:5384102/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:6566130/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:7168143/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:7244824/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:7905891/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:8672325/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:8898211/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:11592508/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:15357978/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:15580257/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:16274470/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:16584851/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:165864/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:16726660/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:13577694/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:1131946/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:13311977/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:13016107/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:10737064/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          <  1:15241215/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGGGATCATTTCAGC                                                                          <  1:13940604/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:20005373/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:28779499/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:27691861/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGGTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                        <  1:21639010/68‑1

      CCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                          >  1:766424/1‑65

       CGCCATCTTTTAGCTGACCATCGCTCAACTTTGCACCTTCAAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:1132463/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:21037355/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:22261196/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                      >  1:27544131/1‑68

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                     <  1:27185707/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                     <  1:3335871/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                     <  1:19689951/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                     <  1:17757645/68‑1

          CATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAA                                                                   <  1:25300105/68‑1

           ATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAG                                                                  <  1:19838575/68‑1

           ATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAG                                                                  <  1:6632926/68‑1

             CTTTTAGCTGACCATCGCTCACCGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                                <  1:5142742/68‑1

             CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                                <  1:25831198/68‑1

             CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                                <  1:12976570/68‑1

             CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                                <  1:5833008/68‑1

             CTTTTAGCTCACCATCGCTCAACGTTGCCCCTTCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                                <  1:537870/68‑1

               TTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGC                                                              <  1:12886571/68‑1

                  AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                           <  1:7004030/68‑1

                  AGCTGACCAGCGCTCAACGGTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                           <  1:1328047/68‑1

                    CTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGGGATCATTTCAGCGCTGGAAGGTGCAACGT                                                         <  1:13972680/68‑1

                     TGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACG                                                          <  1:24403362/66‑1

                     TGACCATCGCTCAACGTTGCACCTTCCAGCGCTCGCGTGATCATTTCCGCGCTGGAAGGTGCAACGT                                                         <  1:27789324/67‑1

                         ccTCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTACAGCGCTGGAAGGTGCAACGTTGAGC                                                    <  1:21270013/66‑1

                                  ACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAG                                           <  1:11504388/68‑1

                                  ACGTTGCACCTCCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAG                                           <  1:15185174/68‑1

                                  ACGTTGCACCATCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAG                                           <  1:19751709/68‑1

                                   CGTTGCCCCTTCCCGCGCGGGCGTGATCATATCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:27657097/68‑1

                                   CGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:21016592/68‑1

                                   CGTTGCACCTTCCACCGCTGGCGTGATCATTTCCGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:4796685/68‑1

                                   CGTTGCACCTACCCGCGCTGGCGGGATCATTGCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:15697551/68‑1

                                   CGTTCCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCGGGAAGGTGCAACGTTGAGCGATGGTCAGC                                          <  1:22832528/68‑1

                                                                    AGCGCTGGAAGGTGCAACGTTGAGCGATGGTAAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATG         >  1:3195730/1‑68

                                                                     GCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGA        >  1:10175447/1‑68

                                                                       GCTGGAAGGTGCTACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCATTGGTATTAAAATCGATGAAG      <  1:16749526/68‑1

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:4188117/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      <  1:11905014/68‑1

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:11840949/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:25643456/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:11118784/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:17686464/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:8748339/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG      >  1:18384930/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGA        <  1:5338067/66‑1

                                                                         TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTT    <  1:21247277/68‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG   <  1:24365998/68‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG   <  1:23833947/68‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG   <  1:21199197/68‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCT‑AAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGT  <  1:3596014/68‑1

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGT  >  CP009273/3375228‑3375294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.