| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3701786 | 94 (0.270) | 5 (0.020) | 4/88 | NT | 6.3% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 129 total aligned reads displayed.
TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3701708‑3701786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcctgctcAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < CP009273/3701789‑3701723 TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:8889910/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:8240240/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:1080073/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:3251118/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:27622434/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:19806084/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:16716409/1‑68TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTCCAGATGCAAA > 1:10313237/1‑68 CAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAA > 1:17015178/1‑68 CAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAA > 1:2279635/1‑68 CAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAA > 1:3249193/1‑68 CAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAA > 1:4223897/1‑68 AGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:17463440/1‑68 AGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:24920548/1‑68 AGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:23273561/1‑68 GGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:27421371/1‑68 GCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:13116120/1‑67 GCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:4446154/1‑67 GCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTCCAGAAGCAAAAAA > 1:23421152/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:22468953/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:21164075/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:29152434/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:20720646/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:20614261/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:22492515/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:19952147/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:35407/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:4084694/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:8143284/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:7372362/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:1559370/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:16252631/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG < 1:16618534/67‑1 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:16983669/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:11317284/1‑67 CCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCAGCAGATGCAAAAAAG > 1:18387680/1‑67 CTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGC < 1:20744657/67‑1 ACGTGGAGTCTAACCTCCCTGCCCCCGGAGGTTGTCATCCTCATGAGCTGCAGATGCAAAAATGCCTG < 1:28099340/68‑1 ACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTG < 1:2384859/68‑1 ACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTG < 1:17563820/68‑1 ACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTG < 1:28085781/68‑1 ACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTG < 1:519347/68‑1 ACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTG < 1:14492085/68‑1 CGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC < 1:11382947/68‑1 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAATCATGC > 1:14163009/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCT < 1:17378350/68‑1 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:26495523/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:27354470/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:2727984/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:10179979/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:27376326/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:27769019/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:4648279/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:5675634/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:6601166/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:10319495/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:8352566/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:8711457/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:11764980/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:25289031/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:13436111/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:13444158/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:14039954/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:14796996/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:18738136/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:19996544/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:21056251/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:22046237/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCAGC > 1:11895259/1‑67 GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTCGAGATGCAAAAAAGCCTcc > 1:747080/1‑65 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:2773154/68‑1 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:7269374/68‑1 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:15527019/1‑68 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:22710053/68‑1 TCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:18332314/68‑1 CGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:24358375/67‑1 CGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:1498336/67‑1 CGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:4700768/67‑1 CGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:20932063/67‑1 CGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:27983587/67‑1 TCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCAACGAGCAGGCT < 1:22145427/68‑1 CCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTG < 1:5118703/47‑1 TCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCAACGCGCAGGCGTTTTTGCATCTGCAGCTCATGA > 1:12836281/1‑68 TCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGA > 1:6687399/1‑68 GAGCTGCAGATGCAAAAAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAG > 1:21038894/1‑68 AAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAG < 1:12638294/67‑1 AAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAG < 1:12043756/67‑1 AAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAG < 1:26324100/67‑1 AAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAG < 1:11756225/67‑1 AAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAG < 1:11258309/67‑1 TCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGA < 1:28349480/68‑1 TCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCG > 1:6875299/1‑67 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < 1:22728449/68‑1 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < 1:5605325/68‑1 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < 1:27311512/68‑1 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < 1:8126568/68‑1 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCG > 1:6614308/1‑66 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCG > 1:5274477/1‑66 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCG > 1:25257892/1‑66 CAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCG > 1:17328179/1‑66 TCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3701708‑3701786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcctgctcAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGAC < CP009273/3701789‑3701723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |