| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 283 (0.800) | 26 (0.090) | 9/88 | NT | 10.8% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 206 (0.740) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
Only 100 of 158 total aligned reads displayed.
AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCT < 1:9385187/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:15444682/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:27942161/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:19189681/68‑1 CATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTC < 1:12527301/68‑1 ATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCA > 1:13352490/1‑68 TAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAG < 1:18466248/68‑1 AGCCTTTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG < 1:5403884/68‑1 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG < 1:21958818/68‑1 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG < 1:21198607/68‑1 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCC > 1:28718938/1‑67 AGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCC > 1:1418785/1‑67 GCCATTTGGTTTCAATATTATGCAAACTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:27911388/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:2919659/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:1781633/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:3029674/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:2091392/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:15221072/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:1310468/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:11209797/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:24297286/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:24332465/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:7127707/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:13769053/1‑67 GCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCG > 1:7075165/1‑67 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:27178085/68‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:6587881/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:190388/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCC < 1:26274230/67‑1 CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGC < 1:12643314/66‑1 GTCATCCATTACGTTTTACTCTGTCAGCCGCCCGAATGGGCGTAGAATGCCCGCAAGGGCGGCTGACA > 1:5547509/1‑68 CATCCATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGGGGCTGACAGA > 1:3302811/1‑68 TCCATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGT > 1:12236231/1‑68 TCCATTACGTTTTACTCTGTAAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGT > 1:20888075/1‑68 ATTACGTTTTACTCTGTCAGCCGCCCGATTGGAGGTAGAATGCCCGCAAGGGCGGGTGACAGAGTAAA > 1:27499846/1‑68 ATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGGCAGAGTTAA > 1:15953614/1‑68 ATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAA > 1:16372358/1‑68 ATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAA > 1:507782/1‑68 ATTACGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAA > 1:22722766/1‑68 ATTACGTTTTACTCAGTCAGCCGCCCGAATGGACGAAGAATACCCGCAAGGGCGGATAACAGAGTAAA > 1:10059293/1‑68 CGTTTTACTCTGTCAGCCGCGCGCATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAATCGT > 1:7926705/1‑68 CGTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGT > 1:17263971/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGCCAGAGTAAAACGTA > 1:11813912/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:4336911/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:4821108/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:23559536/1‑68 GTTTTACTCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTA > 1:9296764/1‑68 ACTCTGTCAGCCGCCCGAATGGGCGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGA > 1:6059566/1‑68 TCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:16975329/1‑68 TCTGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:13018845/1‑68 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:332222/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:23785422/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:582681/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:27034232/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:2537955/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:8869758/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:25119405/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:17635704/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:19589791/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:10518989/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGAC < 1:23790382/68‑1 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:16052156/1‑66 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATG > 1:21543551/1‑66 TGTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGGAATGGATG > 1:16859700/1‑66 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:13165093/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:8191999/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:8526860/68‑1 GTCAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACT < 1:11810003/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:23928138/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT > 1:3394300/1‑68 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT > 1:3451555/1‑68 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT < 1:3515541/68‑1 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGT > 1:5549335/1‑68 CAGCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTG < 1:26503227/67‑1 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGGGGCTGACAGAGTAAAACGTAATGGATGAGTGTGG > 1:24761393/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:14603811/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:16199116/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:15385019/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:4624260/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:12944246/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:10151167/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:17946153/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:20653848/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:17009362/1‑68 GCCGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG > 1:27556682/1‑68 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:24598400/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:20623859/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGT < 1:6224063/67‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGG < 1:7499263/66‑1 CGCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTG < 1:23912054/65‑1 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:4132988/1‑68 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:23589971/1‑68 GCCCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGC > 1:2251649/1‑68 CCGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGA > 1:7301862/1‑68 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACATAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:23089828/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:14214371/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:23585999/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:21203765/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:6532391/68‑1 CGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < 1:4626031/68‑1 AATCATAAAGCCATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4548052‑4548130‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcagccgcccGAATGGACGTAGAATGCCCGCAAGGGCGGCTGACAGAGTAAAACGTAATGGATGACTGTGGTGCGAT < CP009273/4548153‑4548087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |