| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776704 | 460 (1.300) | 61 (0.180) +AAC |
5/106 | NT | 12.3% | intergenic (+26/‑121) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | = 777108 | NA (NA) | noncoding (76/76 nt) | lysQ | tRNA‑Lys | |||||
Only 100 of 662 total aligned reads displayed.
AATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACC > CP009273/776639‑776771 | aaTCAATTGTTCGCAGTTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGc < 1:13741473/68‑1 (MQ=255)aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGc < 1:298631/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGt < 1:11969722/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGt < 1:12429286/68‑1 (MQ=255) aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGa < 1:4635540/68‑1 (MQ=255) aTTGTTCGCAGCTTGGAATCCTGCACTACACACAAGTTTTAACATCAAACTCAGATGTTAAGCGTGaa < 1:20040398/68‑1 (MQ=17) aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGaa > 1:5013141/1‑68 (MQ=255) ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAg < 1:3488791/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:16475656/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:15647962/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:797293/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:23034140/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:28136989/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACAAGTTTTAACATCAAACTCAGATGCTAAGCGTGAAgg < 1:5441829/68‑1 (MQ=17) gCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAAc < 1:24376922/68‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAAc < 1:28564710/68‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATACCg < 1:5249208/67‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACg < 1:13936874/67‑1 (MQ=255) aTCCTGCACGACCCACCAGTTTTAACATCAAAATCAGATGTTAAGCGTGAAGGATAACGTTgcgaaa > 1:24741563/1‑64 (MQ=255) tCCTGCACGACCCACCAGTTTTAACATCCAACGCAGATGTTAAGCGTTACGGATAACGTTGCGCCCGc > 1:25793015/1‑68 (MQ=14) tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGc < 1:2025027/68‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCATATGTTAACAGTGAAGCATAACGTTGCGCCACCAACgg > 1:28802771/1‑67 (MQ=18) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg > 1:20984526/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:4062696/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg > 1:26290000/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:2681139/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg > 1:10254746/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:6795216/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGc < 1:25582923/68‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGc < 1:17390332/68‑1 (MQ=255) ctaCCCACCTGTTTTAACATCCAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:16774240/66‑1 (MQ=17) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:16556273/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:18308504/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:14421070/68‑1 (MQ=255) gACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGccc > 1:16369018/1‑68 (MQ=255) gACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGccc < 1:8808845/68‑1 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:16057290/1‑68 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:16969879/1‑68 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:1007993/1‑68 (MQ=255) accaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAgg < 1:18627284/68‑1 (MQ=255) ccaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAgg > 1:13509376/1‑67 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:27507766/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:27378566/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:9393979/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:11393025/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:12232119/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:1333106/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:17832977/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:384961/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGAAGGgcg > 1:21249522/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑c > 1:13091163/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑c > 1:21579033/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑c > 1:12585785/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑c > 1:10917708/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑c > 1:19699609/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑c > 1:25151528/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑c > 1:736794/1‑68 (MQ=255) tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑cga < 1:5863788/68‑1 (MQ=255) tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑cga > 1:23553313/1‑68 (MQ=255) aaaCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGag‑cgaag‑cga < 1:23290523/66‑1 (MQ=255) ctctGATGTAAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCAt < 1:26650/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCAt < 1:24996190/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCAt < 1:27896045/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCAt < 1:10647498/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCAt < 1:10745325/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCAt < 1:19240859/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCAt < 1:3163182/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTCGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCAt < 1:24048169/68‑1 (MQ=255) tCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGACGAAGTCGAGTCa < 1:14083985/68‑1 (MQ=14) tCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCAt > 1:2280183/1‑67 (MQ=255) tggatGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctc < 1:15295021‑M1/66‑59 (MQ=255) tctatgtTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctc < 1:14941638‑M1/65‑59 (MQ=255) gATGTTTAaaatggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:27214957‑M1/68‑61 (MQ=255) gATGTTAAaactggtggttcgtgcaggattcgaacgtgcgaccaatttattaaaagtcaactgctcta < 1:1461350‑M1/68‑61 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:22271054‑M1/68‑61 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:19498014‑M1/68‑61 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:4346788‑M1/68‑61 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:12818531‑M1/1‑7 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:7657759‑M1/1‑7 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:22103782‑M1/1‑7 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:8127804‑M1/1‑7 (MQ=255) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCt < 1:26060286/65‑1 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGc < 1:26475248/67‑1 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGACATCCTGc > 1:9647013/1‑67 (MQ=255) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca > 1:8565132‑M1/1‑5 (MQ=255) gTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCAc > 1:18884115/1‑68 (MQ=40) gTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCAc > 1:1722391/1‑68 (MQ=40) tAAtactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctaccaac < 1:27647919‑M1/68‑66 (MQ=255) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc < 1:1905570/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc < 1:22490637/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc < 1:23862862/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc < 1:9137961/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc < 1:25300068/68‑1 (MQ=40) aaGCGTCAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc < 1:20604334/68‑1 (MQ=255) aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAcc < 1:29034819/68‑1 (MQ=40) aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc > 1:6389375/1‑67 (MQ=40) aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc > 1:21970080/1‑67 (MQ=40) aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc > 1:2871756/1‑67 (MQ=40) aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc > 1:11695188/1‑67 (MQ=40) aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGAc > 1:11229752/1‑67 (MQ=40) | AATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAG‑CGAAG‑CGAGTCATCCTGCACGACC > CP009273/776639‑776771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |