| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2402276 | NA (NA) | 6 (0.020) | 3/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 343 total aligned reads displayed.
CTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATG > CP009273/2402211‑2402343 | cTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGgag < 1:10626929/67‑1 (MQ=255) tttGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGAt < 1:231940/68‑1 (MQ=255) tttGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGAt < 1:27919241/68‑1 (MQ=255) gAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGc < 1:8028737/68‑1 (MQ=255) gAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGc < 1:22086617/68‑1 (MQ=255) gAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGc < 1:28313054/68‑1 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCTGAGATTGCa > 1:2848559/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:17212713/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:28894595/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:1649938/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:27415964/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:15318055/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:18821265/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:366536/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:27093642/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:4559041/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:20266157/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:12772045/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:7092928/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:7396360/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:22327932/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:2252535/1‑68 (MQ=255) aGCAAGTTCGCGCGTTTCCTTTATGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:19020947/1‑68 (MQ=255) gCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTCTAATCTTAATTTCACTGCCGGAGATTGCa > 1:534189/1‑67 (MQ=255) aaGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAt > 1:26861182‑M2/1‑65 (MQ=255) gcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAtccggcagtga > 1:11963343‑M2/1‑57 (MQ=255) tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGcc > 1:19593361/1‑67 (MQ=255) tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGcc > 1:19339646/1‑67 (MQ=255) tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGcc > 1:26612598/1‑67 (MQ=255) tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGcc > 1:8510456/1‑67 (MQ=255) tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGcc > 1:3088597/1‑67 (MQ=255) cTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCcac < 1:21691127/68‑1 (MQ=255) tGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAtgcaatctccggcagtgaaattaagattac > 1:16228928‑M1/1‑38 (MQ=255) ggTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACaa > 1:20657831/1‑68 (MQ=255) gTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAAt > 1:26038655/1‑68 (MQ=255) gTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAAt > 1:6839093/1‑68 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATg > 1:20842515/1‑67 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:2494582/68‑1 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:22296212/68‑1 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:6247812/68‑1 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:3507532/68‑1 (MQ=255) atcatcAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGAc < 1:27805484/68‑1 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:10523894/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGAGTTATCCCGCCACAATGACCtg > 1:704631/1‑68 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAtgcaatctccggcagtgaaattaagattacagctgatga > 1:11305722‑M1/1‑29 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga < 1:17287825/68‑1 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:28982700/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:21357014/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGACAATGCATCCGCCACCGTTATCCCGCCACAATGACCagatga > 1:14058110/1‑68 (MQ=255) cTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTgatgat > 1:22785610/1‑68 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga < 1:7851637/66‑1 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCAtccggcagtgaaattaagattacagctgatgataaccaga > 1:3346190‑M2/1‑28 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtca > 1:26541393/1‑68 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtca < 1:23350617/68‑1 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtca > 1:4321921/1‑68 (MQ=255) aaTCATAATTTCACTGCCGGAGATTGCAtccggcagtgaaattaagattacagctgatgataaccaga > 1:25519981‑M2/1‑28 (MQ=255) aTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcat < 1:1506592/68‑1 (MQ=255) aTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcat < 1:1471944/68‑1 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:9509773/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:245457/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc < 1:15713637/68‑1 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:17027274/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:1813863/1‑68 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCTCCACAATGACCTGATGATGTCATCATa < 1:14298052/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTcatcat > 1:16754220/1‑67 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:8632565/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:24011381/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:13834288/68‑1 (MQ=255) aaTTTCACTGCCGGAGATTGCTTCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATAc < 1:25219363/68‑1 (MQ=255) tttCACTGCCGGAtgcaatctccggcagtgaaattaagattacagctgatgataaccagaaaggaaac > 1:18311585‑M1/1‑13 (MQ=255) tttCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGt > 1:12649538/1‑68 (MQ=255) ttCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCCTACGTa < 1:6499295/68‑1 (MQ=255) ttCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTa > 1:10011171/1‑68 (MQ=255) ttCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTa > 1:21030003/1‑68 (MQ=255) tCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGAc > 1:11847026/1‑46 (MQ=255) tCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTaa > 1:13637458/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg < 1:25299206/68‑1 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg < 1:5920996/68‑1 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg > 1:12515453/1‑68 (MQ=255) cTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGt < 1:18678185/68‑1 (MQ=255) gCCGGAtgcaatctccggcagtgaaattaagattacagctgatgataaccagaaaggaaacgcgcgaa < 1:13992996‑M1/68‑63 (MQ=255) gCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCa < 1:26177674/68‑1 (MQ=255) cGGAGATTGCATCCTTCAGCGTTATCCCGCCACAATGAACTGATGATGTCATCATACGTAAGGTCACt < 1:20950053/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGCTGATGTCATCATACGTAAGGTCACt < 1:5070006/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:11073970/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:23761923/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:11524021/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:5685057/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:10311443/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:25057712/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:13144611/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:13427741/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:1764587/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:21611983/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:15962969/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:19972705/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:1732335/68‑1 (MQ=255) atgcaatctccggcagtgaaattaagattacagctgatgataaccagaaaggaaacgcgcgaacttg < 1:13555970‑M1/67‑67 (MQ=255) atgcaatctccggcagtgaaattaagattacagctgatgataaccagaaaggaaacgcgcgaacttg < 1:478721‑M1/67‑67 (MQ=255) agaTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt < 1:9170524/67‑1 (MQ=255) | CTTTGAGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATG > CP009273/2402211‑2402343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |