| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2640581 | 219 (0.620) | 11 (0.040) | 8/98 | NT | 5.2% | coding (104/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | = 2640609 | 208 (0.670) | coding (76/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 376 total aligned reads displayed.
GGCGAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGT > CP009273/2640514‑2640648 | ggCGAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCG < 1:6464257‑M1/68‑1 (MQ=255) gAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCTGCGGt < 1:6360091/67‑1 (MQ=255) gAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGt < 1:24102844/67‑1 (MQ=255) gcCATAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:23697795/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCTCGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:3457825/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:176444/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:29016847/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:9274843/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:840712/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:12434473/67‑1 (MQ=255) agCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCagag > 1:19929837/1‑68 (MQ=255) agCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCagag > 1:28712862/1‑68 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:913553/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:24303231/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:11420266/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGt > 1:12662411/1‑68 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGt > 1:12882406/1‑68 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGt > 1:14828422/1‑68 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGt > 1:15945156/1‑68 (MQ=255) gtcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGt < 1:17344451/64‑1 (MQ=255) ggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGttt > 1:13087803/1‑68 (MQ=255) ggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGtt < 1:4421070/67‑1 (MQ=255) ggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGt < 1:25465691/66‑1 (MQ=255) cgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTa < 1:26212559/67‑1 (MQ=255) cgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTa < 1:9762248/67‑1 (MQ=255) cgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTa < 1:2456099/67‑1 (MQ=255) aCCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGtggggagcagataaactctgg < 1:18037051‑M1/68‑22 (MQ=255) aCCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCt > 1:15268693/1‑67 (MQ=255) aCCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCt > 1:2254338/1‑67 (MQ=255) aCCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCt < 1:16119832/67‑1 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGTATTGACTTCTTGCAGCGtggggagcagataaactctggcct < 1:19515666‑M1/68‑25 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:13755367/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:2306154/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:4294163/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:19055218/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:19347881/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:3012526/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:20045020/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:20504207/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTc < 1:22637183/68‑1 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGAATTCATGCAGCGGTAGAGGCAAGAGTTTATCTGCt > 1:6181758/1‑67 (MQ=255) tCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTcc < 1:25315796/68‑1 (MQ=255) ccTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTcc > 1:21048161/1‑67 (MQ=255) ccTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTcc > 1:27169585/1‑67 (MQ=255) ccTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTcc > 1:23954397/1‑67 (MQ=255) ccTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTcc > 1:14062405/1‑67 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGtggggagcagataaactctggcctctaccgc < 1:18896424‑M1/68‑32 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcg > 1:27486148‑M2/1‑65 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:6764122‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:11713251‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:8815603‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:14182475‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:20169711‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:15614799‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:26603542‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:22165995‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:2576922‑M2/66‑2 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:26453503‑M2/1‑63 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:28352640‑M2/1‑63 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:3907504‑M2/1‑63 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:3983597‑M2/1‑63 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:18439543‑M2/1‑63 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:16271099‑M2/1‑63 (MQ=255) aCGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgctgc > 1:11436973‑M2/1‑62 (MQ=255) aCCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAg > 1:11283686/1‑68 (MQ=255) ccACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAg < 1:5670120/67‑1 (MQ=255) cACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGaa < 1:10967459/68‑1 (MQ=255) cTCGTGCGGGATTGACTTCATGCAGCTGTAGAGGCCAGAGTTTATATGCTCCCCACGCTGCAAGaaaa > 1:986753/1‑68 (MQ=255) cTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCCCGCAGCAAGaaaa > 1:1019929/1‑68 (MQ=255) cTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGaaaa < 1:7643993/68‑1 (MQ=255) tCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGaaaaa > 1:26951091/1‑68 (MQ=255) tCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGaaaaa > 1:2486446/1‑68 (MQ=255) cGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAg > 1:1069758/1‑68 (MQ=255) tGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGga > 1:17126125/1‑68 (MQ=255) gCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGga < 1:20299825/67‑1 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:3786091/1‑68 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:9492730/1‑68 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:4976803/1‑68 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:11976118/1‑68 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:15550807/1‑68 (MQ=255) gATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAg > 1:18630342/1‑68 (MQ=255) aTTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGG > 1:8078344‑M1/1‑68 (MQ=255) ttGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGG < 1:27444478‑M1/67‑1 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgctgcatgaagtcaatcccgcacgagt < 1:21927169‑M2/68‑29 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCG > 1:18504863‑M1/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCG > 1:27923195‑M1/1‑68 (MQ=255) tCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGC < 1:541854‑M1/68‑1 (MQ=255) aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTG < 1:2298293‑M1/68‑1 (MQ=255) gCAGCGtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgt > 1:28239678‑M1/1‑6 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:10132288/1‑68 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:11674722/1‑68 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:7957920/1‑68 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:6038519/1‑68 (MQ=255) cAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCa > 1:16442509/1‑68 (MQ=255) aGCGtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtg > 1:13446563‑M1/1‑4 (MQ=255) aGCGtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtg > 1:2136245‑M1/1‑4 (MQ=255) aGCGtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtg > 1:28483242‑M1/1‑4 (MQ=255) cGtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc > 1:13631536‑M1/1‑2 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:7087322/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:21590489/66‑1 (MQ=255) | GGCGAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGT > CP009273/2640514‑2640648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |