| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2974100 | NA (NA) | 8 (0.030) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 372 total aligned reads displayed.
TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCG > CP009273/2974033‑2974167 | tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:21817515‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:20719369‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:28728091‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:6605302‑M1/68‑1 (MQ=255) aaGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:28479450‑M1/1‑67 (MQ=255) gAACGAGACAAGCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:26985565/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGATAAAAGGGCCGGATGTACa > 1:25812076/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:24301673/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:27840100/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:12575642/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:27310659/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:13391416/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAATGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:24764812/1‑67 (MQ=255) aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa < 1:16363/66‑1 (MQ=255) aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa < 1:14270704/66‑1 (MQ=255) aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa < 1:27633592/66‑1 (MQ=255) aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa < 1:1119062/66‑1 (MQ=255) aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa < 1:7751213/66‑1 (MQ=255) aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAg < 1:19356590/67‑1 (MQ=255) aCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGc < 1:5310410/67‑1 (MQ=255) aCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCa > 1:8669754‑M2/1‑67 (MQ=255) cGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCac < 1:12780566‑M2/68‑3 (MQ=255) cGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCac > 1:24373270‑M2/1‑66 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:26459502‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:27986927‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:3532712‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:4893818‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:12619628‑M2/1‑65 (MQ=255) gagaCAAACGCATCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTAGAGCaca > 1:22600769‑M2/1‑65 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:23695480‑M2/68‑7 (MQ=255) cAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatc > 1:2131902‑M2/1‑61 (MQ=255) aaaCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccgg > 1:19598893‑M2/1‑60 (MQ=255) aaCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggc > 1:6906398‑M2/1‑59 (MQ=255) aCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGAacatccggcc > 1:11465845‑M2/1‑58 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:16896497‑M2/68‑12 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:22407419‑M2/68‑12 (MQ=255) gcgtCAACGGCGAATTGCCGAATCTCTATTAAGGTTAAATGGGCCGGATGTACAGCACATCCGGCCCg < 1:2335289/65‑1 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg > 1:21500047/1‑68 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg < 1:13666953/68‑1 (MQ=255) ccTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCga > 1:7293348/1‑67 (MQ=255) ccTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGt > 1:29047485/1‑68 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:6268071/1‑67 (MQ=255) cGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggcccttttttcg > 1:10861599‑M2/1‑49 (MQ=255) cAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTgctgttcatccggcccttttttggttaa > 1:24022689‑M1/1‑40 (MQ=255) aaGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg < 1:12908897/68‑1 (MQ=255) aaGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg < 1:8134044/68‑1 (MQ=255) aGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGAcc > 1:17685319/1‑66 (MQ=255) aGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg > 1:9720424/1‑67 (MQ=255) gCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggcccttttttcgttaatagag > 1:9219286‑M2/1‑40 (MQ=255) gCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGa > 1:8575885/1‑68 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:10197095/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:2713691/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:25222666/68‑1 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTgctgtacatccggcccttttttcgttaatagagattgg > 1:5462714‑M1/1‑30 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt > 1:28264763/1‑67 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt > 1:26061013/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGGCCGTGAAATCAGACGCCGATATTtc > 1:23593708/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGGAATCAGACGCCGATATTtc > 1:15694954/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:19842721/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:23941284/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:8269566/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:18331105/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:17751501/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:7928314/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:11831296/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:13882624/1‑67 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCACCt > 1:4404029/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:4706891/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:9475676/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:10461533/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:189039/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:15468884/1‑68 (MQ=255) aaCGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:25528211/1‑66 (MQ=255) cGAAAAAAGGGCCGGATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccg > 1:8812755‑M1/1‑19 (MQ=255) cGAAAAAAGGGCCGGATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccg > 1:3281891‑M1/1‑19 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGCCGCCGATATTTCTAAACTtctc > 1:14861653/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:8889690/1‑68 (MQ=255) aaaaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc < 1:20017133/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:22950928/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:11057221/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:16656826/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:12219160/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:21906438/68‑1 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc > 1:13736120/1‑68 (MQ=255) gggCCGGATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcg < 1:6125689‑M1/68‑58 (MQ=255) gggCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCa > 1:12034154/1‑68 (MQ=255) ggCCGGATGTACAGCCCATCCGGCCCGTGAAATCAGACGCCGATATTTCTCACCTTCTCGCCTGCCa > 1:10286702/1‑67 (MQ=255) cGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCTACTTCTCGCCTGCCATCa < 1:27717150/67‑1 (MQ=255) cGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCa < 1:12427704/67‑1 (MQ=255) ggATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgt < 1:9160102‑M1/68‑63 (MQ=255) ggATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgt < 1:14230556‑M1/68‑63 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctc > 1:22790967‑M1/1‑3 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctc > 1:11912635‑M1/1‑3 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctc > 1:19177519‑M1/1‑3 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctc > 1:20292309‑M1/1‑3 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtct < 1:3019672‑M1/67‑65 (MQ=255) gtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctcg > 1:20221043‑M1/1‑2 (MQ=255) gtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctcg > 1:28949267‑M1/1‑2 (MQ=255) gTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGc < 1:3729919/68‑1 (MQ=255) tACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCg > 1:8476334/1‑68 (MQ=255) | TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCG > CP009273/2974033‑2974167 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |