| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3348965 | 299 (0.850) | 27 (0.090) | 12/96 | NT | 9.7% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 249 (0.820) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
Only 100 of 688 total aligned reads displayed.
TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 | tgcatggagttaaagtcaaagaaggcacgcagttccgggtccatatccgggttgttctgcCAGGCggg > 1:20592168‑M1/61‑68 (MQ=255)tgcatggagttaaagtcaaagaaggcacgcagttccgggtccatatccgggttgttctgcCAGGCggg > 1:23768898‑M1/61‑68 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:21220405‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:25514825‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:1790111‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:58260‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:6040161‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:12844845‑M1/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:27303520/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:6368333/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:7434407/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:11456434/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:15417487/68‑1 (MQ=255) aaCCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATatca < 1:16804368/68‑1 (MQ=255) aCCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATatcat < 1:13601551/68‑1 (MQ=255) agtcaaagaaggcacgcagttccgggtccatatccgggttgttctgcCAGGCGGGATGGATATCATcc < 1:3032993‑M1/21‑1 (MQ=255) ctGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGcc < 1:14918312/68‑1 (MQ=255) gACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCAt < 1:7343997/68‑1 (MQ=255) gACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCAt < 1:8083181/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCCGGCGGGtggttctaataggcgcatggc > 1:1986182‑M1/1‑46 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:15268760/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:1832887/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:16119461/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc < 1:12106458/68‑1 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc > 1:25223761/1‑68 (MQ=255) tCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGTTGGATATCATCAGCGCCATGCg > 1:18930345/1‑68 (MQ=255) tCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCg < 1:23018171/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:20355004/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:9712319/68‑1 (MQ=255) cAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTc < 1:2469822/68‑1 (MQ=255) cAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTc < 1:28591273/68‑1 (MQ=255) cAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTc < 1:12373934/68‑1 (MQ=255) tCGATTGATAACATGCTGGTACTGCTGCTGTCAGGCGGGATGGATATAATCCGCGCCATGCGTCTa < 1:18725482/66‑1 (MQ=255) tCGATGGATATCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:3618841/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGtggtactaatagacgcatggcgcggatga > 1:5713083‑M1/1‑39 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:4267929/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:23406753/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:7020893/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:10238561/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:21410503/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:8468134/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:888802/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:22557464/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:16491343/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:11163946/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:14530594/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAt < 1:27498468/67‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAt < 1:6821181/67‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAt < 1:6526515/67‑1 (MQ=255) gATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAg < 1:21876829/68‑1 (MQ=255) gATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAg < 1:1824617/68‑1 (MQ=255) aTGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGt > 1:19353953/1‑68 (MQ=255) tGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGt < 1:28716916/67‑1 (MQ=255) tGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGt < 1:15648435/67‑1 (MQ=255) aTAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTacc > 1:9072203/1‑67 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGTGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc > 1:772596‑M2/1‑65 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:2662457‑M2/68‑4 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:2226648‑M2/68‑4 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:24435081‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:17099052‑M2/67‑5 (MQ=255) aTGCTGCAACTGCTGCTGGGAGGCGGGATGGATATCATCCGCGCCATCCGTCTATTAGTCCCAcccgc > 1:21687226‑M2/1‑63 (MQ=255) gCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:20893928‑M2/65‑5 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctg < 1:10425939‑M1/67‑45 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:13942936‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:522476‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:3972707‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTgg < 1:26929020/68‑1 (MQ=255) aCTGCTGCTGGCAGGCGGGtggtactaatagacgcatggcgcggatgatatccctcccgcctgccagc > 1:26353310‑M1/1‑19 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATACGCGCCATGCGTCTATTAGTACCCCCCGCCTGGCAGa > 1:17620712/1‑68 (MQ=255) tgttctgcCAGGCGGGATGGATATCATCCGCGCCATGGGTCTATTAGTACCACCCGCCTGGCAGaaca < 1:14622736‑M1/60‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:20046136/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:28356885/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:13055500/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:15944154/68‑1 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAcc < 1:23628161/68‑1 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAcc < 1:24179801/68‑1 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:19120806‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:4853073‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:27755872‑M1/1‑8 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat < 1:11689094‑M1/68‑1 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat < 1:5551051‑M1/68‑1 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:12234233‑M1/1‑67 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:22850703‑M1/1‑67 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGGCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:10863995‑M1/1‑67 (MQ=255) AGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat > 1:455300‑M1/1‑67 (MQ=255) AGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat > 1:17289506‑M1/1‑67 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatg > 1:3248997‑M1/1‑4 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatg > 1:13320017‑M1/1‑4 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:20689571‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:29069766‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:16900768‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:26034468‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagca < 1:25697035‑M1/66‑63 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt < 1:14365708‑M1/68‑66 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt < 1:10648188‑M1/68‑66 (MQ=255) gggATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcatgt < 1:28152656‑M2/68‑30 (MQ=255) GATGGATATCATCCGCGCTATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:19697782‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:28847654‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:22079868‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:8395383‑M1/1‑67 (MQ=255) | TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |