| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3920778 = | 352 (1.000) | 28 (0.100) | 8/88 | NT | 9.9% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 234 (0.840) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
Only 100 of 528 total aligned reads displayed.
AGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACT > CP009273/3920711‑3920845 | cattacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgg > 1:23573863‑M1/68‑68 (MQ=255)cattacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgg > 1:12567566‑M1/68‑68 (MQ=255) ttacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgggg > 1:18724574‑M1/66‑68 (MQ=255) ttacgcgttcccagtcccactggtcaacatagaacgagtgcaacggagaaagacggtcttcatcgggg > 1:19204644‑M1/66‑68 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCggg < 1:27963869/67‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCggg < 1:25231063/67‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCggg < 1:13643879/67‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc < 1:21848061/68‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc > 1:20321785/1‑68 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc < 1:6687435/68‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc < 1:17320311/68‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACATTAGGGCAACACGACTTCAGCGCGGGc < 1:28686878/68‑1 (MQ=255) aacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGc > 1:13451089‑M1/65‑68 (MQ=255) cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa < 1:10015751‑M1/6‑1 (MQ=255) cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa < 1:23840300‑M1/6‑1 (MQ=255) cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa < 1:22147101‑M1/6‑1 (MQ=255) cgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAg < 1:27785309‑M1/8‑1 (MQ=255) cgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAg < 1:17733154‑M1/8‑1 (MQ=255) gttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAgg > 1:22335266‑M1/60‑68 (MQ=255) gttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAgg < 1:8665610‑M1/9‑1 (MQ=255) gttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAgg > 1:28750038‑M1/60‑68 (MQ=255) gttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAgg > 1:3279342‑M1/60‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:14509794/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:6042647/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:4955243/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:19650190/1‑68 (MQ=255) tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:25596136‑M1/58‑68 (MQ=255) tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:28493390‑M1/58‑68 (MQ=255) gtttcattcaCTGGCGAAGTGGAAACGTCTGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc < 1:17953294/66‑1 (MQ=255) ggTTCCTGCACTGGCGCCGGGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:465144/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGTAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg < 1:1752056/67‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg < 1:18631815/67‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg < 1:8113697/67‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg < 1:2992654/67‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:9729266/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:24728026/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:261293/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:24617446/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:11435825/1‑66 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:3116835/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:7242559/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc < 1:1222715/68‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTAAGACCTTAGTGCAACACGACTTCAGCGCGGGCGAAgg > 1:12409271/1‑66 (MQ=255) ttcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCt < 1:1712055/67‑1 (MQ=255) ttcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCt < 1:6298123/67‑1 (MQ=255) gtcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCt < 1:1675364/66‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:21727432/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:25863635/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt > 1:1183585/1‑68 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:4001684/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:23448306/68‑1 (MQ=255) cattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTa < 1:2817341/68‑1 (MQ=255) attcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTac > 1:20575018/1‑68 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac < 1:8429029/68‑1 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:142286/1‑68 (MQ=255) caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:5199887/1‑67 (MQ=255) caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:4454095/1‑67 (MQ=255) actggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGc < 1:11134598‑M1/20‑1 (MQ=255) tggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACCCGcaca < 1:20810411‑M1/23‑1 (MQ=255) cGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACAt < 1:14715939/67‑1 (MQ=255) ggAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGcc < 1:10435592/68‑1 (MQ=255) ggAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGcc < 1:1585125/68‑1 (MQ=255) ggAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCGGTACACGCACATGAAAGcc < 1:12806123/68‑1 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc < 1:16233633‑M1/35‑1 (MQ=255) ccgagtgcaacggagaaagacggtcttcatagGGGCGAAGGGCTGTACCCGCACATGGAAGCCCTTc < 1:4217733‑M1/35‑1 (MQ=255) tCAGCCCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGc > 1:27391844/1‑67 (MQ=255) gcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTcgcccgc < 1:20016950‑M1/41‑3 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:3670408/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:6951278/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:13967437/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:24019762/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:2272693/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:18251441/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:13082911/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:23313000/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:883576/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCACCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:10193026/1‑68 (MQ=255) cTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATg < 1:23077802/68‑1 (MQ=255) cTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATg < 1:899396/68‑1 (MQ=255) cTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATg > 1:20134610/1‑68 (MQ=255) aGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAg < 1:16037811/68‑1 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:26875875/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:26508811/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:1496515/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:15136457/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:15345564/1‑68 (MQ=255) gCAACACCACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGCAATCCCTTCGCCCGCGCTGAAgt < 1:5618609/67‑2 (MQ=25) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGt < 1:21315006/68‑1 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGt < 1:24198196/68‑1 (MQ=255) acggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGCCCGTCtt < 1:11987802‑M1/55‑1 (MQ=255) acggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGGCtt < 1:15706042‑M1/55‑1 (MQ=255) ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTcc < 1:9296671/68‑1 (MQ=255) cAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGt < 1:27074652/68‑1 (MQ=255) aGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCACCGtt > 1:7483631/1‑68 (MQ=255) tcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc < 1:21622067‑M1/65‑1 (MQ=255) tcgGGGCGAAGGGCGGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGCCCGTCTTTCGCCGTTGc < 1:24483738‑M1/65‑1 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:2105500/1‑68 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:24899943/1‑68 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCa < 1:5393633/68‑1 (MQ=255) GGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCAc > 1:10696376‑M1/1‑67 (MQ=255) | AGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACT > CP009273/3920711‑3920845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |