| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3935250 | 3 (0.010) | 72 (0.230) +AAGCTGT |
6/98 | NT | 96.5% | noncoding (83/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4028968 | NA (NA) | noncoding (78/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
Only 100 of 104 total aligned reads displayed.
TCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGA > CP009273/3935191‑3935316 | tCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCaagctgt < 1:20995707‑M1/67‑8 (MQ=255) ccgaaCACATGCAAGGCTCACGGTTACAGGAAACAGCTTGCTTTTTCGCTGACGAGTGGCGGACggg < 1:16856295/64‑1 (MQ=1) actcaTGCAAGTCGAACGGTAACGTGCACCAGCTTTCTGTTTCGCTTAAGAGTTGATGCCGGGTGAGt < 1:5606299/65‑1 (MQ=0) cacaTGCAAGTCGAACGGTAACAGGAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgtt > 1:13150955‑M1/1‑32 (MQ=255) cacaTGCAAGTCGAACGGTAACAGGAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgtt > 1:18886275‑M1/1‑32 (MQ=255) acttGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGGGAGTaa > 1:18964186/4‑68 (MQ=0) cGAACGGTTACAGGAAACAGCaagctggttgctgttaccgttcgacttgcatgtgttagggctgccg > 1:26296106‑M1/1‑21 (MQ=255) cGAACGGTAACAGGAAACAGCaagctgtttcctgttaccgttcgacgtgcatgtgttagggctgccg > 1:22077472‑M1/1‑21 (MQ=255) aaCAGGAAACAGCaagctgtttcctgttaccgttcgccttgcatgtgttaggcctgccgccagcgttc > 1:3497030‑M1/1‑13 (MQ=255) aCAGGAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttca > 1:20166273‑M1/1‑12 (MQ=255) aGGAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa > 1:4219165‑M1/1‑10 (MQ=255) aGGAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa > 1:2023590‑M1/1‑10 (MQ=255) aGGAAACAGCaagctgtttcctgttaccgtgcgacttgcatgtgttaggcctgccgccagcgttcaa > 1:12187602‑M1/1‑10 (MQ=255) ggAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa > 1:19448802‑M1/1‑9 (MQ=255) gAAACCGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:4022299‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatc < 1:15471313‑M1/67‑60 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:19198466‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:19632889‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:25909385‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:18759196‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:18465407‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:2072498‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:22129451‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:10355063‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:25922099‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:29255867‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:3813233‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:7051221‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:83409‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:8747689‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:8817087‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:1402991‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:14144336‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:17198622‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:11268827‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:16497663‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:16335083‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:11303820‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:14305704‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:1538132‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:14892961‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:11556641‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:13281714‑M1/66‑59 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa > 1:26798599‑M1/1‑8 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa < 1:21452199‑M1/65‑58 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa < 1:13891160‑M1/65‑58 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa < 1:22621425‑M1/65‑58 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa < 1:9531968‑M1/65‑58 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa < 1:5705693‑M1/65‑58 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa > 1:5799400‑M1/1‑8 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa < 1:10526064‑M1/65‑58 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa > 1:8989257‑M1/1‑8 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa < 1:16784694‑M1/65‑58 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa < 1:18318178‑M1/65‑58 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa > 1:17848552‑M1/1‑8 (MQ=255) gAAACAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaa < 1:19086253‑M1/65‑58 (MQ=255) gAAACAGCaagctgtttcctgttaccgatcgacttgcatgtgttaggcctgccgccagcgttcaat < 1:21075262‑M1/66‑59 (MQ=255) aaccAGCTGGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAAGGTCTGGGAAACTGCCTGATg < 1:9370111/62‑1 (MQ=1) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccggcagcgttcaatctga > 1:15997077‑M1/1‑6 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:1342010‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:21782746‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:28396412‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:27899854‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:10905575‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:10690771‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:11776642‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:4793065‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:25892806‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:10542182‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:8739510‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:10103696‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:21873685‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:20376817‑M1/68‑63 (MQ=255) aaCAGCaagctgtttcctgttaacgatcgacttgcatgtgttaggcctgccgccagcgttcaatctga < 1:21747567‑M1/68‑63 (MQ=255) aCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgag < 1:1145996‑M1/68‑64 (MQ=255) aCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgag < 1:601931‑M1/68‑64 (MQ=255) aCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgag < 1:4462640‑M1/68‑64 (MQ=255) aCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga > 1:7993203‑M1/1‑5 (MQ=255) aCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga > 1:9391725‑M1/1‑5 (MQ=255) aCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga > 1:17502718‑M1/1‑5 (MQ=255) aCAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctga > 1:25021336‑M1/1‑5 (MQ=255) cAGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgag > 1:20079690‑M1/1‑4 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgcgcc > 1:7298704‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:22394348‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:1456458‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:22711289‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:23015318‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:17595361‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:23300705‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:25979194‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:6246069‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:19663744‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:28572643‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:2926478‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:11370291‑M1/1‑3 (MQ=255) aGCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcc > 1:3552740‑M1/1‑3 (MQ=255) gCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcca > 1:17536285‑M1/1‑2 (MQ=255) gCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcca > 1:906023‑M1/1‑2 (MQ=255) gCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcca > 1:11101775‑M1/1‑2 (MQ=255) gCaagctgtttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagcca > 1:431805‑M1/1‑2 (MQ=255) | TCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGA > CP009273/3935191‑3935316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |