| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4047497 | 255 (0.720) | 26 (0.090) | 9/94 | NT | 9.7% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | CP009273 | = 4047517 | 271 (0.910) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
Only 100 of 412 total aligned reads displayed.
CGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCT > CP009273/4047430‑4047563 | ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:23324271/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:28045487/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:29060605/68‑1 (MQ=255) ccAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:28437701/68‑1 (MQ=255) ccAGCTGTCCGGTTGAATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt < 1:5105805/68‑1 (MQ=255) cAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATc < 1:21940873/68‑1 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:850745/1‑65 (MQ=255) gCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt > 1:17892407/1‑65 (MQ=255) tGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa < 1:7301490/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:3709719/68‑1 (MQ=255) gTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGaa < 1:21289967/68‑1 (MQ=255) ccGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATc > 1:25564568/1‑68 (MQ=255) ccGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATc > 1:12464191/1‑68 (MQ=255) cGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa < 1:17648904/68‑1 (MQ=255) ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa > 1:1049797/1‑67 (MQ=255) tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAATCAGTTCGCCGGGCAAATCCTGAATCAac > 1:14877285/1‑66 (MQ=255) tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAaca < 1:9706302/67‑1 (MQ=255) tGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac > 1:4006505/1‑66 (MQ=255) gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt < 1:22377956/68‑1 (MQ=255) cATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt > 1:23498687/1‑67 (MQ=255) aTTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACtt < 1:3242851/67‑1 (MQ=255) aTTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACtt < 1:17196328/67‑1 (MQ=255) cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc < 1:15972701‑M2/67‑4 (MQ=255) cGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgc < 1:1922767‑M2/67‑4 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgccc > 1:18583009‑M2/1‑63 (MQ=255) gAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACATCCtgccc > 1:11562252‑M2/1‑63 (MQ=255) aGTACTCTCCGCAACCGTTGATTCAAAAAGTTCGCCGGGCAggaagtgttgattgaggatttgcccg > 1:3024010‑M1/1‑41 (MQ=255) tACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAA‑TCCTGAATCAACACTTCCtgcccggcg < 1:26330560‑M2/67‑10 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtggtgattcaggatttgcccggcga > 1:10005025‑M1/1‑38 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcga > 1:21025893‑M2/1‑58 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggc > 1:5741092‑M2/1‑58 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:18297005/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:19166260/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg < 1:24476178/68‑1 (MQ=255) aCTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCAGCCcggcgg < 1:19485895/68‑1 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGATTCAACACTTCCTGCCCGGCGGcc > 1:28372424/1‑68 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc > 1:27082447/1‑68 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc < 1:24037609/68‑1 (MQ=255) tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGcc > 1:7753356/1‑68 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact > 1:12716600‑M2/1‑55 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaact > 1:20837457‑M2/1‑55 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa < 1:11146282/68‑1 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa < 1:5898095/68‑1 (MQ=255) ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa > 1:1995404/1‑68 (MQ=255) tcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAggaagtggtgattcaggatttgcccggcga > 1:28620169‑M1/1‑34 (MQ=255) tcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactg > 1:11769420‑M2/1‑54 (MQ=255) tcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggc > 1:15492162‑M2/1‑54 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgt > 1:15732320‑M2/1‑53 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:18701569/1‑68 (MQ=255) ccGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc > 1:478541/1‑68 (MQ=255) gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAc < 1:2367016/68‑1 (MQ=255) cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc > 1:22811519/1‑68 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:24954625/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:10775244/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:5553805/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:8669137/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:10076583/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:4286650/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:11391872/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:12369013/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:14391165/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:14102541/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:13106532/67‑1 (MQ=255) aaCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCAcc < 1:2262542/67‑1 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:25764998/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:16694675/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:26890167/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:17453392/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:27555113/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:13817259/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:5256156/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGt > 1:23745195/1‑68 (MQ=255) aCCGTTGATTCAAACAGTTAGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaa > 1:6752837‑M1/1‑28 (MQ=255) gATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCagcccggcgaactgtttgaatcaacg > 1:2562226‑M2/1‑42 (MQ=255) ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGc > 1:4455883/1‑68 (MQ=255) ttCAAACAGTTCGCCGGCCAAACCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggt > 1:24684995‑M2/1‑40 (MQ=255) ttCAAACAGTGCGCCGGGCAAATCCTGAATCAACACTACCtgcccggcgaactgtttgaatcaacggt > 1:21558483‑M2/1‑40 (MQ=255) tccaaACAGTTCGCCGGGCAAAACCTCAATCAACACTCCCtgcccggcgaactgtttgaatcaacggt > 1:4931818‑M2/3‑40 (MQ=255) tCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCg < 1:9246732/68‑1 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCtgcccggcgaactgtttgaatcaacggttgcgg > 1:13481990‑M2/1‑35 (MQ=255) aCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAg > 1:14804103/1‑68 (MQ=255) aCAGTTCGCCGGGCAAATCCGGAATCAACACTATCTGCCCGGCGGACATCACCGTTAGCCAGCGGCAg > 1:6516502/1‑68 (MQ=255) aGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggag > 1:7456734‑M1/1‑13 (MQ=255) aGTTCGCCGGGCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggag > 1:24871636‑M1/1‑13 (MQ=255) aGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt > 1:15190183/1‑68 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg < 1:9003811/64‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt < 1:7946974/67‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgtgt < 1:26155015/67‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt < 1:28259079/65‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt < 1:26621294/65‑1 (MQ=255) tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtt < 1:6265422/68‑1 (MQ=255) ccGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtt > 1:22756030/2‑68 (MQ=255) cGCCGGGCAggaagtgttgattcaggttttgcccggcgaactgtttgaatgaacgggtgcggagagt < 1:16115604‑M1/67‑59 (MQ=255) cGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGttt < 1:16465159/68‑1 (MQ=255) ccGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt > 1:2011765/1‑67 (MQ=255) ccGGGCAAATCCTGAATCAACACTTACAGCCCGGCGGCCATCACCGTTAGACAGCGGCAGGTGtttt > 1:11951609/1‑67 (MQ=255) gggCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttc < 1:7091208‑M1/68‑64 (MQ=255) gggCAggaagtgttgattcaggatttgcccggcgaactgtttgaatcaacggttgcggagagtacttc < 1:18096983‑M1/68‑64 (MQ=255) gggCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCa > 1:22989050/1‑68 (MQ=255) aaaTCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCt < 1:23156708/67‑1 (MQ=255) | CGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCT > CP009273/4047430‑4047563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |